Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G116300.1 | |
| TraesCS3B01G135400.1 | |
| TraesCS3D01G118200.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G11540.1 | TraesCS3A01G116300.1 | AT1G22770.1 | 15155885 |
| AT3G11540.1 | TraesCS3B01G135400.1 | AT1G22770.1 | 15155885 |
| AT3G11540.1 | TraesCS3D01G118200.2 | AT1G22770.1 | 15155885 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G136300.1 | Wheat | cytosol, plastid | 90.87 | 91.26 |
| TraesCS6D01G095600.1 | Wheat | cytosol | 90.13 | 90.22 |
| HORVU6Hr1G019280.3 | Barley | cytosol | 86.31 | 83.99 |
| EES14080 | Sorghum | cytosol | 80.57 | 82.95 |
| Zm00001d031938_P001 | Maize | plastid | 80.15 | 82.88 |
| Os08t0559300-01 | Rice | cytosol | 81.32 | 82.63 |
| GSMUA_Achr3P22610_001 | Banana | cytosol | 73.04 | 74.95 |
| VIT_08s0007g02910.t01 | Wine grape | cytosol | 72.19 | 74.4 |
| AT3G11540.1 | Thale cress | cytosol | 71.76 | 73.96 |
| CDY08515 | Canola | cytosol | 71.23 | 73.9 |
| Bra034832.1-P | Field mustard | cytosol | 71.66 | 73.85 |
| CDY01033 | Canola | cytosol | 71.55 | 73.74 |
| PGSC0003DMT400023083 | Potato | cytosol | 72.19 | 73.04 |
| KRH67954 | Soybean | cytosol | 71.23 | 73.01 |
| KRH72262 | Soybean | cytosol | 71.76 | 72.84 |
| Solyc09g010180.2.1 | Tomato | extracellular | 71.87 | 72.72 |
| KRH32780 | Soybean | cytosol | 71.23 | 69.68 |
| KRH38138 | Soybean | cytosol | 13.91 | 69.31 |
| KRG96211 | Soybean | plastid | 71.13 | 69.0 |
| CDX73870 | Canola | cytosol | 62.53 | 65.44 |
| Bra001408.1-P | Field mustard | cytosol | 62.53 | 65.44 |
| CDY00739 | Canola | cytosol | 70.28 | 61.93 |
| TraesCS2A01G275800.1 | Wheat | cytosol | 23.89 | 22.82 |
| TraesCS4A01G089400.1 | Wheat | mitochondrion | 7.43 | 8.31 |
Protein Annotations
| KEGG:00514+2.4.1.255 | Gene3D:1.25.40.10 | MapMan:18.1.2.2.1 | Gene3D:3.40.50.11380 | Gene3D:3.40.50.2000 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR011990 | InterPro:IPR013026 | InterPro:IPR019734 |
| InterPro:OGT/SEC/SPY_C | PFAM:PF00515 | PFAM:PF13181 | PFAM:PF13374 | PFAM:PF13432 | PFAM:PF13844 |
| PFscan:PS50005 | PFscan:PS50293 | PANTHER:PTHR44835 | SMART:SM00028 | SMART:SM00671 | SUPFAM:SSF48452 |
| InterPro:Sel1-like | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | InterPro:TPR_1 | InterPro:TPR_repeat | EnsemblPlantsGene:TraesCS6A01G107700 |
| EnsemblPlants:TraesCS6A01G107700.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr6A:+:76513610..76524351
Molecular Weight (calculated)
103786.0 Da
IEP (calculated)
5.573
GRAVY (calculated)
-0.201
Length
942 amino acids
Sequence
(BLAST)
(BLAST)
001: MQPGMEPLQG KESNGAVPDC NGAAAPPAKQ QLPEGTDALR YANILRSRNK FADALQLYST VLDKDGTNVE ALIGKGICLQ AQSLPRQALD CFTEAVKVDP
101: KNACALTHCG MIYKDEGHLV EAAEAYQKAR SADPSYKAAA EFLAIVLTDL GTSLKLAGNT EDGIQKYCEA LEVDSHYAPA YYNLGVVYSE MMQFDVALTC
201: YEKAALERPL YAEAYCNMGV IYKNRGELDA AIACYDRCLT ISPNFEIAKN NMAIALTDLG TKVKIEGDIN QGVAYYKKAL FYNWHYADAM YNLGVAYGEM
301: LNFEMAIVFY ELALHFNPRC AEACNNLGVI YKDRDNLDKA VECYQMALSI KPNFSQSLNN LGVVYTVQGK MDAAASMIEK AILANPTYAE AYNNLGVLYR
401: DAGSITLSVQ AYERCLQIDP DSRNAGQNRL LAMNYIDEGS DDRLYDAHRE WGKRFMKLYA QYTSWDNIRV ADRPLVIGYV SPDFFTHSVS YFVEAPLTHH
501: DYTNCKVVVY SGVVKADAKT LRFKDKVLKK GGVWRDIYGI DEKKVATLVR EDKVDILVEL TGHTANNKLG TMACRPAPIQ VTWIGYPNTT GLPAIDYRIT
601: DSLADSPNTN QRHVEELVRL PESFLCYTPS PEAGPVCPTP AISNGFVTFG SFNNLAKITP KVMQVWARIL CAVPNSRLVV KCKPFCCDSI RQKFLSTLEE
701: LGLESLRVDL LPLIHLNHDH MQAYSLMDIS LDTFPYAGTT TTCESLYMGV PCVTMAGSVH AHNVGVSLLT KVGLGRLVAK TEDEYVSLAL ELASDVSALE
801: ELRKSLRELM IKSPVCDGES FTRGLESAYR SMWHRYCDGD SPALRRLEVL AGEDLDKTAV KLADLKAQRV NATAEEDNQS PLKKADATSK GGEPQIMVND
901: VSSPEGNQAL VTAKAQPQIM VNGGSSPHSP SVRCEANGHS SR
101: KNACALTHCG MIYKDEGHLV EAAEAYQKAR SADPSYKAAA EFLAIVLTDL GTSLKLAGNT EDGIQKYCEA LEVDSHYAPA YYNLGVVYSE MMQFDVALTC
201: YEKAALERPL YAEAYCNMGV IYKNRGELDA AIACYDRCLT ISPNFEIAKN NMAIALTDLG TKVKIEGDIN QGVAYYKKAL FYNWHYADAM YNLGVAYGEM
301: LNFEMAIVFY ELALHFNPRC AEACNNLGVI YKDRDNLDKA VECYQMALSI KPNFSQSLNN LGVVYTVQGK MDAAASMIEK AILANPTYAE AYNNLGVLYR
401: DAGSITLSVQ AYERCLQIDP DSRNAGQNRL LAMNYIDEGS DDRLYDAHRE WGKRFMKLYA QYTSWDNIRV ADRPLVIGYV SPDFFTHSVS YFVEAPLTHH
501: DYTNCKVVVY SGVVKADAKT LRFKDKVLKK GGVWRDIYGI DEKKVATLVR EDKVDILVEL TGHTANNKLG TMACRPAPIQ VTWIGYPNTT GLPAIDYRIT
601: DSLADSPNTN QRHVEELVRL PESFLCYTPS PEAGPVCPTP AISNGFVTFG SFNNLAKITP KVMQVWARIL CAVPNSRLVV KCKPFCCDSI RQKFLSTLEE
701: LGLESLRVDL LPLIHLNHDH MQAYSLMDIS LDTFPYAGTT TTCESLYMGV PCVTMAGSVH AHNVGVSLLT KVGLGRLVAK TEDEYVSLAL ELASDVSALE
801: ELRKSLRELM IKSPVCDGES FTRGLESAYR SMWHRYCDGD SPALRRLEVL AGEDLDKTAV KLADLKAQRV NATAEEDNQS PLKKADATSK GGEPQIMVND
901: VSSPEGNQAL VTAKAQPQIM VNGGSSPHSP SVRCEANGHS SR
001: MVGLEDDTER ERSPVVENGF SNGSRSSSSS AGVLSPSRKV TQGNDTLSYA NILRARNKFA DALALYEAML EKDSKNVEAH IGKGICLQTQ NKGNLAFDCF
101: SEAIRLDPHN ACALTHCGIL HKEEGRLVEA AESYQKALMA DASYKPAAEC LAIVLTDLGT SLKLAGNTQE GIQKYYEALK IDPHYAPAYY NLGVVYSEMM
201: QYDNALSCYE KAALERPMYA EAYCNMGVIY KNRGDLEMAI TCYERCLAVS PNFEIAKNNM AIALTDLGTK VKLEGDVTQG VAYYKKALYY NWHYADAMYN
301: LGVAYGEMLK FDMAIVFYEL AFHFNPHCAE ACNNLGVLYK DRDNLDKAVE CYQMALSIKP NFAQSLNNLG VVYTVQGKMD AAASMIEKAI LANPTYAEAF
401: NNLGVLYRDA GNITMAIDAY EECLKIDPDS RNAGQNRLLA MNYINEGLDD KLFEAHRDWG WRFTRLHPQY TSWDNLKDPE RPITIGYISP DFFTHSVSYF
501: IEAPLTHHDY TKYKVVVYSA VVKADAKTYR FRDKVLKKGG VWKDIYGIDE KKIASMVRED KIDILVELTG HTANNKLGTM ACRPAPVQVT WIGYPNTTGL
601: PTVDYRITDS LADPPDTKQK QVEELVRLPD CFLCYTPSPE AGPVCPTPAL SNGFVTFGSF NNLAKITPKV LQVWARILCA VPNSRLVVKC KPFCCDSIRQ
701: RFLTTLEQLG LESKRVDLLP LILFNHDHMQ AYSLMDISLD TFPYAGTTTT CESLYMGVPC VTMAGSVHAH NVGVSLLTKV GLGHLVAKNE DEYVQLSVDL
801: ASDVTALSKL RMSLRDLMAG SPVCNGPSFA VGLESAYRNM WKKYCKGEVP SLRRMEMLQK EVHDDPLISK DLGPSRVSVT GEATPSLKAN GSAPVPSSLP
901: TQSPQLSKRM DSTS
101: SEAIRLDPHN ACALTHCGIL HKEEGRLVEA AESYQKALMA DASYKPAAEC LAIVLTDLGT SLKLAGNTQE GIQKYYEALK IDPHYAPAYY NLGVVYSEMM
201: QYDNALSCYE KAALERPMYA EAYCNMGVIY KNRGDLEMAI TCYERCLAVS PNFEIAKNNM AIALTDLGTK VKLEGDVTQG VAYYKKALYY NWHYADAMYN
301: LGVAYGEMLK FDMAIVFYEL AFHFNPHCAE ACNNLGVLYK DRDNLDKAVE CYQMALSIKP NFAQSLNNLG VVYTVQGKMD AAASMIEKAI LANPTYAEAF
401: NNLGVLYRDA GNITMAIDAY EECLKIDPDS RNAGQNRLLA MNYINEGLDD KLFEAHRDWG WRFTRLHPQY TSWDNLKDPE RPITIGYISP DFFTHSVSYF
501: IEAPLTHHDY TKYKVVVYSA VVKADAKTYR FRDKVLKKGG VWKDIYGIDE KKIASMVRED KIDILVELTG HTANNKLGTM ACRPAPVQVT WIGYPNTTGL
601: PTVDYRITDS LADPPDTKQK QVEELVRLPD CFLCYTPSPE AGPVCPTPAL SNGFVTFGSF NNLAKITPKV LQVWARILCA VPNSRLVVKC KPFCCDSIRQ
701: RFLTTLEQLG LESKRVDLLP LILFNHDHMQ AYSLMDISLD TFPYAGTTTT CESLYMGVPC VTMAGSVHAH NVGVSLLTKV GLGHLVAKNE DEYVQLSVDL
801: ASDVTALSKL RMSLRDLMAG SPVCNGPSFA VGLESAYRNM WKKYCKGEVP SLRRMEMLQK EVHDDPLISK DLGPSRVSVT GEATPSLKAN GSAPVPSSLP
901: TQSPQLSKRM DSTS
Arabidopsis Description
SPYProbable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Source:UniProtKB/Swiss-Prot;Acc:Q96301]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.