Factsheet for Zm00001d031938_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d008826_P078
Zm00001d039589_P136

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11540.1	Zm00001d008826_P078	AT1G22770.1	15155885
AT3G11540.1	Zm00001d039589_P136	AT1G22770.1	15155885

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES14080	Sorghum	cytosol	94.73	94.32
Os08t0559300-01	Rice	cytosol	83.53	82.09
TraesCS6B01G136300.1	Wheat	cytosol, plastid	82.77	80.38
TraesCS6A01G107700.1	Wheat	cytosol	82.88	80.15
TraesCS6D01G095600.1	Wheat	cytosol	82.66	80.02
HORVU6Hr1G019280.3	Barley	cytosol	81.78	76.96
GSMUA_Achr3P22610_001	Banana	cytosol	75.63	75.05
CDY08515	Canola	cytosol	74.64	74.89
AT3G11540.1	Thale cress	cytosol	75.08	74.84
VIT_08s0007g02910.t01	Wine grape	cytosol	74.86	74.62
CDY01033	Canola	cytosol	74.53	74.29
Bra034832.1-P	Field mustard	cytosol	74.53	74.29
KRH72262	Soybean	cytosol	75.19	73.81
PGSC0003DMT400023083	Potato	cytosol	75.08	73.47
Solyc09g010180.2.1	Tomato	extracellular	74.86	73.25
KRH67954	Soybean	cytosol	73.87	73.23
KRH32780	Soybean	cytosol	74.75	70.72
KRG96211	Soybean	plastid	73.66	69.1
KRH38138	Soybean	cytosol	14.16	68.25
Bra001408.1-P	Field mustard	cytosol	65.42	66.22
CDX73870	Canola	cytosol	65.42	66.22
CDY00739	Canola	cytosol	73.11	62.3
Zm00001d031337_P001	Maize	cytosol	3.73	27.64
Zm00001d016506_P003	Maize	cytosol	24.81	21.46
Zm00001d050343_P001	Maize	cytosol	5.05	20.91
Zm00001d003691_P002	Maize	cytosol	3.51	14.88
Zm00001d015678_P001	Maize	extracellular	2.41	14.47
Zm00001d044204_P001	Maize	cytosol, peroxisome, plasma membrane, plastid	5.93	10.02
Zm00001d047855_P001	Maize	mitochondrion	7.79	8.42
Zm00001d028533_P001	Maize	mitochondrion	7.68	8.33

Protein Annotations

KEGG:00514+2.4.1.255	Gene3D:1.25.40.10	MapMan:18.1.2.2.1	Gene3D:3.40.50.11380	Gene3D:3.40.50.2000	UniProt:A0A1D6KMF8
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009719	GO:GO:0009736	GO:GO:0009938	GO:GO:0009987
GO:GO:0016740	GO:GO:0016757	GO:GO:2000377	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734
InterPro:OGT/SEC/SPY_C	ProteinID:ONM04026.1	PFAM:PF00515	PFAM:PF13374	PFAM:PF13432	PFAM:PF13844
PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR44835	SMART:SM00028	SMART:SM00671	SUPFAM:SSF48452
InterPro:Sel1-like	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_1	InterPro:TPR_repeat	UniParc:UPI000844A9B4
EnsemblPlantsGene:Zm00001d031938	EnsemblPlants:Zm00001d031938_P001	EnsemblPlants:Zm00001d031938_T001	SEG:seg	:	:

Description

Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY

Coordinates

chr1:-:207474094..207480770

Molecular Weight (calculated)

101019.0 Da

IEP (calculated)

5.840

GRAVY (calculated)

-0.200

Length

911 amino acids

Sequence
(BLAST)

001: MGQPGMDSVP GKENNGIAPN LNGVVSPAKQ QLEGKEAMRY ANILRSRNKF ADAINLYTIV LEKDGTNVEA LIGKGICLQA QNLPRQAIEC FTEAVKIEPG
101: NASALTHCGM IYKDEGHLVE AAEAYQKARM ADPSYKPASE FLAIVLTDLG TSLKLAGNTE EGIQKYCEAL EVDNHYAPAY YNLGVVYSEM MQFDMALSCY
201: EKAALERPLY AEAYCNMGVI YKNRGDLDAA IICYERCLTI SPNFEIAKNN MAIALTDLGT KVKIEGDINR GVAYYKKALY YNWHYADAMY NLGVAYGEML
301: NFEMAIVFYE LALHFNPRCA EACNNLGVIY KDRDNLDKAV ECYQMALSIK PLFAQSLNNL GVVYTVQGKM DSAASMIEKA IHANPTYAEA YNNLGVLYRD
401: AGSITLAIHA YERCLQIDPD SRNAGQNRLL AMNYIDEGSD DKLYEAHREW GKRFMKLYPQ YTSWDNSKVA DRPLIIGYLS PDYFTHSVSY FIEAPLTHHD
501: STVCKVVVYS GVVKADAKTL RFKDKVLKKG GLWRDIYGID EKRVASLVRE DKVDILVELT GHTANNKLGT MACRPAPIQV TWIGYPNTTG LPTIDYRISD
601: SLTDPPMTKQ KHVEELVRLP ESFLCYTPSP EAGPVCPTPA ISNGFVTFGS FNNLAKITPK VLQVWARILC SVPNSRLVVK CKPFCCENIR QKFLATLEEL
701: GLESLRVDLL PLIHLNHDHM QAYSLMDISL DTFPYAGTTT TCESLYMGVP CVTMAGAVHA HNVGVSLLSK VGLGRLVAKT EDEYVSLALD LASDVNALQE
801: LRMTLRELMM KSPVCEGERF TRGLEAAYMD MWRRYCDGDV PSLRRLALLE EHPVANGPDS DKTSEKLADL KAQRASATVE EDNQPPAMAN GVRSPSSPAA
901: AKCESNGHSS Q

Best Arabidopsis Sequence Match ( AT3G11540.1 )
(BLAST)

001: MVGLEDDTER ERSPVVENGF SNGSRSSSSS AGVLSPSRKV TQGNDTLSYA NILRARNKFA DALALYEAML EKDSKNVEAH IGKGICLQTQ NKGNLAFDCF
101: SEAIRLDPHN ACALTHCGIL HKEEGRLVEA AESYQKALMA DASYKPAAEC LAIVLTDLGT SLKLAGNTQE GIQKYYEALK IDPHYAPAYY NLGVVYSEMM
201: QYDNALSCYE KAALERPMYA EAYCNMGVIY KNRGDLEMAI TCYERCLAVS PNFEIAKNNM AIALTDLGTK VKLEGDVTQG VAYYKKALYY NWHYADAMYN
301: LGVAYGEMLK FDMAIVFYEL AFHFNPHCAE ACNNLGVLYK DRDNLDKAVE CYQMALSIKP NFAQSLNNLG VVYTVQGKMD AAASMIEKAI LANPTYAEAF
401: NNLGVLYRDA GNITMAIDAY EECLKIDPDS RNAGQNRLLA MNYINEGLDD KLFEAHRDWG WRFTRLHPQY TSWDNLKDPE RPITIGYISP DFFTHSVSYF
501: IEAPLTHHDY TKYKVVVYSA VVKADAKTYR FRDKVLKKGG VWKDIYGIDE KKIASMVRED KIDILVELTG HTANNKLGTM ACRPAPVQVT WIGYPNTTGL
601: PTVDYRITDS LADPPDTKQK QVEELVRLPD CFLCYTPSPE AGPVCPTPAL SNGFVTFGSF NNLAKITPKV LQVWARILCA VPNSRLVVKC KPFCCDSIRQ
701: RFLTTLEQLG LESKRVDLLP LILFNHDHMQ AYSLMDISLD TFPYAGTTTT CESLYMGVPC VTMAGSVHAH NVGVSLLTKV GLGHLVAKNE DEYVQLSVDL
801: ASDVTALSKL RMSLRDLMAG SPVCNGPSFA VGLESAYRNM WKKYCKGEVP SLRRMEMLQK EVHDDPLISK DLGPSRVSVT GEATPSLKAN GSAPVPSSLP
901: TQSPQLSKRM DSTS

Arabidopsis Description

SPYProbable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Source:UniProtKB/Swiss-Prot;Acc:Q96301]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.