CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY04787
CDY21388

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11540.1	CDY04787	AT1G22770.1	15155885
AT3G11540.1	CDY21388	AT1G22770.1	15155885

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73870	Canola	cytosol	81.1	96.33
CDY08515	Canola	cytosol	77.46	91.19
AT3G11540.1	Thale cress	cytosol	77.74	90.92
CDY01033	Canola	cytosol	74.74	87.42
VIT_08s0007g02910.t01	Wine grape	cytosol	67.54	78.99
PGSC0003DMT400023083	Potato	cytosol	64.92	74.54
Solyc09g010180.2.1	Tomato	extracellular	64.83	74.44
GSMUA_Achr3P22610_001	Banana	cytosol	63.14	73.53
Zm00001d031938_P001	Maize	plastid	62.3	73.11
EES14080	Sorghum	cytosol	62.02	72.46
Os08t0559300-01	Rice	cytosol	62.11	71.63
KRH38138	Soybean	cytosol	12.54	70.9
TraesCS6B01G136300.1	Wheat	cytosol, plastid	62.02	70.68
TraesCS6D01G095600.1	Wheat	cytosol	62.02	70.46
TraesCS6A01G107700.1	Wheat	cytosol	61.93	70.28
HORVU6Hr1G019280.3	Barley	cytosol	62.39	68.91
CDY21133	Canola	cytosol, mitochondrion	20.67	22.67
CDY29989	Canola	cytosol	20.67	22.64
CDY46833	Canola	cytosol, mitochondrion, nucleus, plastid	6.55	8.66
CDY55452	Canola	cytosol	1.78	8.56

Protein Annotations

KEGG:00514+2.4.1.255	Gene3D:1.25.40.10	MapMan:18.1.2.2.1	Gene3D:3.40.50.11380	Gene3D:3.40.50.2000	EnsemblPlants:CDY00739
ProteinID:CDY00739	ProteinID:CDY00739.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00110598001
InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	InterPro:OGT/SEC/SPY_C	PFAM:PF00515	PFAM:PF13374
PFAM:PF13424	PFAM:PF13432	PFAM:PF13844	PFscan:PS50005	PFscan:PS50293	SMART:SM00028
SMART:SM00671	SUPFAM:SSF48452	InterPro:Sel1-like	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_1
InterPro:TPR_repeat	UniPathway:UPA00378	UniParc:UPI0004EEB43C	:	:	:

Description

BnaC03g37230D

Coordinates

chrLK031921:+:694505..701707

Molecular Weight (calculated)

119024.0 Da

IEP (calculated)

5.494

GRAVY (calculated)

-0.192

Length

1069 amino acids

Sequence
(BLAST)

0001: MVVLEDNTER ERSPPLVENG FANGPKAFQG NGNDNDNDTL SYANVLRARN KFSDALALYE TLLDKDSNNV EAHIGKGICL QTQSKANLAF DCFSEAIRLD
0101: PHNACALTHC GILHKEEGRL VEAAESYQRA LMADASYKPA AECLVVVLTD LGTSLKLAGN TQEGIQKYYE ALKIDPHYAP AYYNLGVVYS EMMQYDSALG
0201: CYEKAALERP MYAEAYCNMG VIYKNRGDLE MAITCYERCL AVSPNFEIAK NNMAIALTDL GTKVKLEGDV SQGVAYYKKA LYYNWHYADA MYNLGVAYGE
0301: MLKFDMAIVF YELAFHFNPH CAEACNNLGV LYKDRDNLDK AVECYQMALS IKPNFAQSLN NLGVVYTVQG KMDAAASMIE KAIHANPTYA EAFNNLEMAI
0401: TCYERCLAVS PNFEIAKNNM AIALTDLGTK VKLEGDVSQG VAYYKKALYY NWHYADAMYN LGVAYGEMLK FDMAIVFYEL AFHFNPHCAE ACNNLGVLYK
0501: DRDNLDKAVE CYQMALSIKP NFAQSLNNLG VVYTVQGKMD AAADMIEKAI LANPTYGEAF NNLGVLYRDA GNITAAIDAY EECLKIDQDS RNAGQNRLLA
0601: MNYINEGLDD KLYEAHRDWG WRFTRLHPQY TSWDNVKDPE RPITIGYISP DFFTHSVSYF IEAPLTHHDY TKYRVVVYSA VVKADAKTFR FRDKVLKKGG
0701: VWKDIYGIDE KKIASMVRDD EIDILVELTG HTANNKLGTM ACRPAPVQVT WIGYPNTTGL PTVDYRITDS LADPPDTKQK QVEELVRLPE CFLCYTPSPE
0801: AGPVCPTPAL SNGFVTFGSF NNLAKITPKV LQVWARILCA VPNSRLVVKC KPFCSDSVRQ RFLATLEQLG LESKRVDLLP LILFNHDHMQ AYSLMDISLD
0901: TFPYAGTTTT CESLYMGVPC VTMSGSVHAH NVGVSLLSNV GLGRLVAKNE DEYVRLSVDL ASDVTALSKL RMSLRDLMAG SPVCNGPSFA VALESAYRSM
1001: WRSYCKGEVP SLKRMEKLQR EVQEDPLISS RLNVTGEATP SLKANGSAPV PSSLPTQSWQ LSKNMDSTS

Best Arabidopsis Sequence Match ( AT3G11540.1 )
(BLAST)

001: MVGLEDDTER ERSPVVENGF SNGSRSSSSS AGVLSPSRKV TQGNDTLSYA NILRARNKFA DALALYEAML EKDSKNVEAH IGKGICLQTQ NKGNLAFDCF
101: SEAIRLDPHN ACALTHCGIL HKEEGRLVEA AESYQKALMA DASYKPAAEC LAIVLTDLGT SLKLAGNTQE GIQKYYEALK IDPHYAPAYY NLGVVYSEMM
201: QYDNALSCYE KAALERPMYA EAYCNMGVIY KNRGDLEMAI TCYERCLAVS PNFEIAKNNM AIALTDLGTK VKLEGDVTQG VAYYKKALYY NWHYADAMYN
301: LGVAYGEMLK FDMAIVFYEL AFHFNPHCAE ACNNLGVLYK DRDNLDKAVE CYQMALSIKP NFAQSLNNLG VVYTVQGKMD AAASMIEKAI LANPTYAEAF
401: NNLGVLYRDA GNITMAIDAY EECLKIDPDS RNAGQNRLLA MNYINEGLDD KLFEAHRDWG WRFTRLHPQY TSWDNLKDPE RPITIGYISP DFFTHSVSYF
501: IEAPLTHHDY TKYKVVVYSA VVKADAKTYR FRDKVLKKGG VWKDIYGIDE KKIASMVRED KIDILVELTG HTANNKLGTM ACRPAPVQVT WIGYPNTTGL
601: PTVDYRITDS LADPPDTKQK QVEELVRLPD CFLCYTPSPE AGPVCPTPAL SNGFVTFGSF NNLAKITPKV LQVWARILCA VPNSRLVVKC KPFCCDSIRQ
701: RFLTTLEQLG LESKRVDLLP LILFNHDHMQ AYSLMDISLD TFPYAGTTTT CESLYMGVPC VTMAGSVHAH NVGVSLLTKV GLGHLVAKNE DEYVQLSVDL
801: ASDVTALSKL RMSLRDLMAG SPVCNGPSFA VGLESAYRNM WKKYCKGEVP SLRRMEMLQK EVHDDPLISK DLGPSRVSVT GEATPSLKAN GSAPVPSSLP
901: TQSPQLSKRM DSTS

Arabidopsis Description

SPYProbable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Source:UniProtKB/Swiss-Prot;Acc:Q96301]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.