CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46833	Canola	cytosol, mitochondrion, nucleus, plastid	73.87	20.3
AT2G32450.1	Thale cress	cytosol	68.47	18.95
VIT_18s0001g13570.t01	Wine grape	cytosol	58.56	16.27
Solyc04g081050.1.1	Tomato	cytosol	57.66	15.96
KRH33574	Soybean	cytosol	54.95	15.21
PGSC0003DMT400009639	Potato	cytosol	57.21	14.94
KRG90336	Soybean	nucleus	53.6	14.84
HORVU4Hr1G061170.3	Barley	cytosol, mitochondrion, nucleus	52.7	13.88
Zm00001d028533_P001	Maize	mitochondrion	52.25	13.81
Os03t0263900-01	Rice	plasma membrane	52.7	13.8
TraesCS4D01G215500.1	Wheat	mitochondrion	52.25	13.78
Zm00001d047855_P001	Maize	mitochondrion	52.25	13.76
TraesCS4A01G089400.1	Wheat	mitochondrion	51.8	13.66
EER95134	Sorghum	mitochondrion	51.8	13.64
TraesCS4B01G215000.1	Wheat	cytosol, mitochondrion	51.35	13.54
GSMUA_Achr10P...	Banana	plasma membrane	49.1	12.11
Zm00001d044204_P001	Maize	cytosol, peroxisome, plasma membrane, plastid	11.26	4.64
CDY21133	Canola	cytosol, mitochondrion	12.61	2.87
CDY29989	Canola	cytosol	12.61	2.87
CDX73870	Canola	cytosol	8.56	2.11
CDY08515	Canola	cytosol	8.56	2.09
CDY01033	Canola	cytosol	8.56	2.08
CDY00739	Canola	cytosol	8.56	1.78

Protein Annotations

EnsemblPlants:CDY55452	EnsemblPlantsGene:GSBRNA2T00016853001	PANTHER:PTHR45081	ProteinID:CDY55452	ProteinID:CDY55452.1	SUPFAM:SSF57850
UniParc:UPI0004EDCE57	UniProt:A0A078IVF9	MapMan:35.1	:	:	:

Description

BnaC08g46390DBnaC08g46390D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IVF9]

Coordinates

chrLK033403:+:60584..61304

Molecular Weight (calculated)

25734.2 Da

IEP (calculated)

8.798

GRAVY (calculated)

-0.480

Length

222 amino acids

Sequence
(BLAST)

001: MDHFINIINV EEILRRLLVF LKPEAFQGAI KAINERILSV LDDSGSGRVD MGMHVLRDKR KRVAFEALMW KPVKEGSSQI TKTDAEKYIK LLRAIYMLEA
101: HGEEEEITFN QFLDMLDNPD WGFGIMSTVL RLESNDRNRH GSQVCSVCRY PIIGSWFKEV KARFSLCSQC YSEGKVPPPF KQEEDYRFRE HGSEAEAMKP
201: KCVCFSVQSH KKPIATRKKQ RN

Best Arabidopsis Sequence Match ( AT1G05150.1 )
(BLAST)

001: MATRGSRSEK VKRIFQQFDG NHDGGLNREE MAALVVAVNP RVKFSDEQIN AILDEVFRTY AEFIDPNKGL TYDGLLRTYD DGAGDVDRDF DALGLELNAD
101: ETTIKGSEAA SSSSITDERA VEAQKKQRTA AWAVSPNHGI VFDETWKLVD DLEILVKRLK SKQEKDGKLK ADNNNNNVDA FSDAGWSREL GPSSEISEKR
201: IYWEESSHDY GVFVKELGVL RSKADGARSR EEAFDGHMAI GRVLYEHQLF KEALVSFKRA CELQPTDVRP HFKAGNCLYV LGKCKESKDE FLLALEAAES
301: GGNQWAYLLP QIYVNLGIAL EGEGMVLSAC EYYREAAILC PTHFRALKLL GSALFGVGEY RAAVKALEEA IYLKPDYADA HCDLASSLHS MGEDERAIEV
401: FQRAIDLKPG HVDALYNLGG LYMDLGRFQR ASEMYTRVLT VWPNHWRAQL NKAVSLLGAG ETEEAKRALK EALKLTNRVE LHDAISHLKH LQKKKGKNNG
501: NGNGGEGPFI VVEPSKFKTV GEKTTLRPDL ATALQIRAFQ RVTRLGKCDV EAVRKEMRDN DVPVSYSGSG GPTKSIRKPN LEEILRRLLS SLKPDTFQGA
601: IKAINEKILA LLDDSGSGRV DMGMFYAVIA PLCGGHSDKR KRVAFDALLW RPVNEGSSQI TKTDAVKYIK LLRAIYIPSH GMSEMLEVHG EEEAESSVTV
701: TFNQFLAMFD DPDWGFGIMS TILKLEANDR NRHGNQVCSV CRYPVIGSRF KEVKARFSLC NQCYGEGKVP PSFKQEEYKF REYESEAEAM KAKCVCFSMQ
801: SHKKAIAT

Arabidopsis Description

Uncharacterized TPR repeat-containing protein At1g05150 [Source:UniProtKB/Swiss-Prot;Acc:O23052]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.