CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH33574	Soybean	cytosol	93.77	93.77
VIT_18s0001g13570.t01	Wine grape	cytosol	80.05	80.35
AT1G05150.1	Thale cress	cytosol	77.31	76.73
CDY46833	Canola	cytosol, mitochondrion, nucleus, plastid	77.18	76.61
Bra015393.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	77.06	76.2
Solyc04g081050.1.1	Tomato	cytosol	76.18	76.18
AT2G32450.1	Thale cress	cytosol	75.81	75.81
PGSC0003DMT400009639	Potato	cytosol	72.57	68.47
HORVU4Hr1G061170.3	Barley	cytosol, mitochondrion, nucleus	67.08	63.82
Zm00001d028533_P001	Maize	mitochondrion	66.71	63.69
TraesCS4D01G215500.1	Wheat	mitochondrion	66.71	63.54
EER95134	Sorghum	mitochondrion	66.58	63.35
TraesCS4A01G089400.1	Wheat	mitochondrion	66.33	63.18
Zm00001d047855_P001	Maize	mitochondrion	66.33	63.11
Os03t0263900-01	Rice	plasma membrane	66.58	62.97
TraesCS4B01G215000.1	Wheat	cytosol, mitochondrion	66.08	62.95
GSMUA_Achr10P...	Banana	plasma membrane	67.71	60.33
CDY55452	Canola	cytosol	14.84	53.6
Zm00001d044204_P001	Maize	cytosol, peroxisome, plasma membrane, plastid	31.17	46.38
KRH38067	Soybean	cytosol	0.87	8.75
KRG92600	Soybean	cytosol	9.6	7.79
KRH34180	Soybean	cytosol	9.35	7.59
KRH72262	Soybean	cytosol	8.73	7.54
KRH67954	Soybean	cytosol	8.6	7.51
KRH32780	Soybean	cytosol	8.73	7.27
KRG96211	Soybean	plastid	8.48	7.0
KRH38138	Soybean	cytosol	1.62	6.88

Protein Annotations

Gene3D:1.10.238.10	Gene3D:1.25.40.10	EntrezGene:100779385	Gene3D:3.30.60.90	MapMan:35.1	EMBL:ACUP02012601
InterPro:EF-hand-dom_pair	InterPro:EF_hand_dom	EnsemblPlantsGene:GLYMA_20G084100	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509
GO:GO:0005515	UniProt:I1NEN3	InterPro:IPR002048	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734
EnsemblPlants:KRG90336	ProteinID:KRG90336	ProteinID:KRG90336.1	PFAM:PF13202	PFAM:PF13432	PFscan:PS50005
PFscan:PS50222	PFscan:PS50293	PANTHER:PTHR45081	SMART:SM00028	SUPFAM:SSF47473	SUPFAM:SSF48452
InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI000233DA00	SEG:seg	:

Description

hypothetical protein

Coordinates

chr20:-:31586807..31590429

Molecular Weight (calculated)

89743.3 Da

IEP (calculated)

6.375

GRAVY (calculated)

-0.332

Length

802 amino acids

Sequence
(BLAST)

001: MATRGTRSEK VRRIFNQFDA NRDGGLNREE MALLVGAVNP RVKFSDEQIN AILDEVFRTY GEFIDGDKGL TYEGLLRTYD DGAGDVDRDF DALGLDLVAA
101: DAVKEPLAAS EASSSSIVDE RITVETQKKQ RTAAWAVSPN HGIVFDDTWK IVDDLELLVK RLKVKQSKEG GKLKNDNFDA YSDAGWSREL GPSAEISEKR
201: VMWEESGHDY AVFLKELGGL RGRADGARSR EEAFDGHMAI GRVLYEHQLF KEALVSFKRA CELQPVDVRP HFRAGNCLYV LVRYKEAKEE FLLALESAEA
301: GGNQWAYLLP QIYVNLGIAL EGEGMVLSAC EYYREAAILC PTHFRALKLL GSALFGVGEY RAAVKALEEA IFMKPDYADA HCDLASALHA MGEDERAIEV
401: FQKAIDLKPG HVDALYNLGG LYMDLGRFQR ASEMYTRVLA VWPNHWRALL NKAVSLLGAG ETEEAKRALK EALKMTNRVE LHDAISHLKQ LQKKKTKPSN
501: GGASGEASFV IVEPSKFKVV GEKTTARQEL ATALQIRALQ RVTRLSRCSV ELLKKEMSER DVPVSYSGSG FPEKSIRKPS LEEILHRLLN FLKPETFQGA
601: VKAINERILS VLDENGSGRL DLGLFYAILA PICGGPPDRR KRVAFDALLW RPMNEDGANI RKVDVTVYIK LLRAVYLPSQ GASELMEVRG DSDTSTVSFS
701: EFLVMFDDPD WGFGIMPSLV KLETGDRNRH GDVVCSVCRY PIIGSRFKEI KSHFSLCNQC YSEGKVPSSF KQEEYRFKEY GSEGEAMKDK CMCFNLQSRN
801: EK

Best Arabidopsis Sequence Match ( AT1G05150.1 )
(BLAST)

001: MATRGSRSEK VKRIFQQFDG NHDGGLNREE MAALVVAVNP RVKFSDEQIN AILDEVFRTY AEFIDPNKGL TYDGLLRTYD DGAGDVDRDF DALGLELNAD
101: ETTIKGSEAA SSSSITDERA VEAQKKQRTA AWAVSPNHGI VFDETWKLVD DLEILVKRLK SKQEKDGKLK ADNNNNNVDA FSDAGWSREL GPSSEISEKR
201: IYWEESSHDY GVFVKELGVL RSKADGARSR EEAFDGHMAI GRVLYEHQLF KEALVSFKRA CELQPTDVRP HFKAGNCLYV LGKCKESKDE FLLALEAAES
301: GGNQWAYLLP QIYVNLGIAL EGEGMVLSAC EYYREAAILC PTHFRALKLL GSALFGVGEY RAAVKALEEA IYLKPDYADA HCDLASSLHS MGEDERAIEV
401: FQRAIDLKPG HVDALYNLGG LYMDLGRFQR ASEMYTRVLT VWPNHWRAQL NKAVSLLGAG ETEEAKRALK EALKLTNRVE LHDAISHLKH LQKKKGKNNG
501: NGNGGEGPFI VVEPSKFKTV GEKTTLRPDL ATALQIRAFQ RVTRLGKCDV EAVRKEMRDN DVPVSYSGSG GPTKSIRKPN LEEILRRLLS SLKPDTFQGA
601: IKAINEKILA LLDDSGSGRV DMGMFYAVIA PLCGGHSDKR KRVAFDALLW RPVNEGSSQI TKTDAVKYIK LLRAIYIPSH GMSEMLEVHG EEEAESSVTV
701: TFNQFLAMFD DPDWGFGIMS TILKLEANDR NRHGNQVCSV CRYPVIGSRF KEVKARFSLC NQCYGEGKVP PSFKQEEYKF REYESEAEAM KAKCVCFSMQ
801: SHKKAIAT

Arabidopsis Description

Uncharacterized TPR repeat-containing protein At1g05150 [Source:UniProtKB/Swiss-Prot;Acc:O23052]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.