Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- peroxisome 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH33574 | Soybean | cytosol | 80.35 | 80.05 |
| KRG90336 | Soybean | nucleus | 80.35 | 80.05 |
| Solyc04g081050.1.1 | Tomato | cytosol | 79.97 | 79.68 |
| AT1G05150.1 | Thale cress | cytosol | 79.35 | 78.47 |
| CDY46833 | Canola | cytosol, mitochondrion, nucleus, plastid | 78.1 | 77.23 |
| Bra015393.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 77.97 | 76.82 |
| AT2G32450.1 | Thale cress | cytosol | 76.85 | 76.56 |
| PGSC0003DMT400009639 | Potato | cytosol | 75.97 | 71.41 |
| Zm00001d028533_P001 | Maize | mitochondrion | 68.71 | 65.36 |
| HORVU4Hr1G061170.3 | Barley | cytosol, mitochondrion, nucleus | 68.84 | 65.24 |
| EER95134 | Sorghum | mitochondrion | 68.71 | 65.12 |
| TraesCS4D01G215500.1 | Wheat | mitochondrion | 68.59 | 65.08 |
| TraesCS4A01G089400.1 | Wheat | mitochondrion | 68.34 | 64.85 |
| Zm00001d047855_P001 | Maize | mitochondrion | 68.34 | 64.77 |
| Os03t0263900-01 | Rice | plasma membrane | 68.71 | 64.74 |
| TraesCS4B01G215000.1 | Wheat | cytosol, mitochondrion | 68.09 | 64.61 |
| GSMUA_Achr10P... | Banana | plasma membrane | 69.71 | 61.89 |
| CDY55452 | Canola | cytosol | 16.27 | 58.56 |
| Zm00001d044204_P001 | Maize | cytosol, peroxisome, plasma membrane, plastid | 31.29 | 46.38 |
| VIT_08s0007g02910.t01 | Wine grape | cytosol | 8.89 | 7.77 |
| VIT_04s0043g00760.t01 | Wine grape | cytosol | 9.26 | 7.51 |
| VIT_14s0036g00890.t01 | Wine grape | cytosol | 1.13 | 6.0 |
Protein Annotations
| Gene3D:1.10.238.10 | Gene3D:1.25.40.10 | EntrezGene:100252359 | wikigene:100252359 | Gene3D:3.30.60.90 | MapMan:35.1 |
| EMBL:AM449840 | ProteinID:CAN76555 | ProteinID:CAN76555.1 | ProteinID:CCB46000 | ProteinID:CCB46000.1 | ncoils:Coil |
| InterPro:EF-hand-dom_pair | InterPro:EF_hand_dom | UniProt:F6GZQ8 | EMBL:FN595227 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005509 | GO:GO:0005515 | InterPro:IPR002048 | InterPro:IPR011990 | InterPro:IPR013026 | InterPro:IPR019734 |
| EntrezGene:LOC100252359 | wikigene:LOC100252359 | PFAM:PF13181 | PFAM:PF13424 | PFAM:PF13432 | PFscan:PS50005 |
| PFscan:PS50222 | PFscan:PS50293 | PANTHER:PTHR45081 | SMART:SM00028 | SUPFAM:SSF47473 | SUPFAM:SSF48452 |
| TIGR:TC62999 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | InterPro:TPR_repeat | UniParc:UPI00021097E3 | ArrayExpress:VIT_18s0001g13570 |
| EnsemblPlantsGene:VIT_18s0001g13570 | EnsemblPlants:VIT_18s0001g13570.t01 | unigene:Vvi.10144 | RefSeq:XP_002280691 | RefSeq:XP_002280691.2 | SEG:seg |
Description
No Description!
Coordinates
chr18:-:11584918..11587466
Molecular Weight (calculated)
88860.3 Da
IEP (calculated)
6.848
GRAVY (calculated)
-0.353
Length
799 amino acids
Sequence
(BLAST)
(BLAST)
001: MATRGSRSEK VKRIFQQFDG NCDGGLNRDE MADLVVAVNP RVKFSDAQIS AILDEVFRTY GEFIDGEKGL TYDGLLRTYD DGAGDVDRDF DALGLELNSD
101: DNKGKSAASS SSIADERVLE PHKKQRTAAW AASPNHGIVF DETWKVVDDL EILIKRLKAK QVKDGKMKGD NFDAYSDPGW SRELGPSAEM SEKRVVWEES
201: GHDYALFVKE LGVLRTKADG ARSREEAFDG HMAIGRVLYE HQLFKEALVS FKRACELQPV DVRSHFRAGN CLYVLGRHGE AKEEFTLALE AAENGGNQSA
301: YLLPQIHVNL GIALEGEGMV MSACEHYREA AILCPTHFRA LKLLGSALFG VGEYRAAVKA LEEAIFMKAD YADAHCDLAS ALHAMGEGEK AIPVFQKAID
401: LKPGHVDALY NLGGLYMDMG RFQRASEMYT RVLAVCPNHW RAQLNKAVSL LGAGEAEEAK KALKEALKMT NRVELHDAIS HLKQLQKKKV KPNGSANGEG
501: AFSIVEPSKF KIVGEKTALR PELANTLEIR AFQRITRLRG CDVDLLKKEM TENDVPVSYS GGGVPEKSIR KPNLEVILRR LLQFLKPETF QGAVKAINER
601: ILSVLDETGS GRVDLGMFFS VLAPICGGSP DKRKRVAYDA LLWRPVNEGS AQIRKADALK YIKLLRAIYI PSHGVSEMLE VHGEADVSMV SLSEFLLMFD
701: DPDWGFGIMS SLVKLETGDR TRHGRYACSV CRYPIIGSRF KEMKSHFSLC NQCYSEGKVP STFKQEEYRF KEYGSESEAM KDKCLCFNLQ SKSSSYNDP
101: DNKGKSAASS SSIADERVLE PHKKQRTAAW AASPNHGIVF DETWKVVDDL EILIKRLKAK QVKDGKMKGD NFDAYSDPGW SRELGPSAEM SEKRVVWEES
201: GHDYALFVKE LGVLRTKADG ARSREEAFDG HMAIGRVLYE HQLFKEALVS FKRACELQPV DVRSHFRAGN CLYVLGRHGE AKEEFTLALE AAENGGNQSA
301: YLLPQIHVNL GIALEGEGMV MSACEHYREA AILCPTHFRA LKLLGSALFG VGEYRAAVKA LEEAIFMKAD YADAHCDLAS ALHAMGEGEK AIPVFQKAID
401: LKPGHVDALY NLGGLYMDMG RFQRASEMYT RVLAVCPNHW RAQLNKAVSL LGAGEAEEAK KALKEALKMT NRVELHDAIS HLKQLQKKKV KPNGSANGEG
501: AFSIVEPSKF KIVGEKTALR PELANTLEIR AFQRITRLRG CDVDLLKKEM TENDVPVSYS GGGVPEKSIR KPNLEVILRR LLQFLKPETF QGAVKAINER
601: ILSVLDETGS GRVDLGMFFS VLAPICGGSP DKRKRVAYDA LLWRPVNEGS AQIRKADALK YIKLLRAIYI PSHGVSEMLE VHGEADVSMV SLSEFLLMFD
701: DPDWGFGIMS SLVKLETGDR TRHGRYACSV CRYPIIGSRF KEMKSHFSLC NQCYSEGKVP STFKQEEYRF KEYGSESEAM KDKCLCFNLQ SKSSSYNDP
001: MATRGSRSEK VKRIFQQFDG NHDGGLNREE MAALVVAVNP RVKFSDEQIN AILDEVFRTY AEFIDPNKGL TYDGLLRTYD DGAGDVDRDF DALGLELNAD
101: ETTIKGSEAA SSSSITDERA VEAQKKQRTA AWAVSPNHGI VFDETWKLVD DLEILVKRLK SKQEKDGKLK ADNNNNNVDA FSDAGWSREL GPSSEISEKR
201: IYWEESSHDY GVFVKELGVL RSKADGARSR EEAFDGHMAI GRVLYEHQLF KEALVSFKRA CELQPTDVRP HFKAGNCLYV LGKCKESKDE FLLALEAAES
301: GGNQWAYLLP QIYVNLGIAL EGEGMVLSAC EYYREAAILC PTHFRALKLL GSALFGVGEY RAAVKALEEA IYLKPDYADA HCDLASSLHS MGEDERAIEV
401: FQRAIDLKPG HVDALYNLGG LYMDLGRFQR ASEMYTRVLT VWPNHWRAQL NKAVSLLGAG ETEEAKRALK EALKLTNRVE LHDAISHLKH LQKKKGKNNG
501: NGNGGEGPFI VVEPSKFKTV GEKTTLRPDL ATALQIRAFQ RVTRLGKCDV EAVRKEMRDN DVPVSYSGSG GPTKSIRKPN LEEILRRLLS SLKPDTFQGA
601: IKAINEKILA LLDDSGSGRV DMGMFYAVIA PLCGGHSDKR KRVAFDALLW RPVNEGSSQI TKTDAVKYIK LLRAIYIPSH GMSEMLEVHG EEEAESSVTV
701: TFNQFLAMFD DPDWGFGIMS TILKLEANDR NRHGNQVCSV CRYPVIGSRF KEVKARFSLC NQCYGEGKVP PSFKQEEYKF REYESEAEAM KAKCVCFSMQ
801: SHKKAIAT
101: ETTIKGSEAA SSSSITDERA VEAQKKQRTA AWAVSPNHGI VFDETWKLVD DLEILVKRLK SKQEKDGKLK ADNNNNNVDA FSDAGWSREL GPSSEISEKR
201: IYWEESSHDY GVFVKELGVL RSKADGARSR EEAFDGHMAI GRVLYEHQLF KEALVSFKRA CELQPTDVRP HFKAGNCLYV LGKCKESKDE FLLALEAAES
301: GGNQWAYLLP QIYVNLGIAL EGEGMVLSAC EYYREAAILC PTHFRALKLL GSALFGVGEY RAAVKALEEA IYLKPDYADA HCDLASSLHS MGEDERAIEV
401: FQRAIDLKPG HVDALYNLGG LYMDLGRFQR ASEMYTRVLT VWPNHWRAQL NKAVSLLGAG ETEEAKRALK EALKLTNRVE LHDAISHLKH LQKKKGKNNG
501: NGNGGEGPFI VVEPSKFKTV GEKTTLRPDL ATALQIRAFQ RVTRLGKCDV EAVRKEMRDN DVPVSYSGSG GPTKSIRKPN LEEILRRLLS SLKPDTFQGA
601: IKAINEKILA LLDDSGSGRV DMGMFYAVIA PLCGGHSDKR KRVAFDALLW RPVNEGSSQI TKTDAVKYIK LLRAIYIPSH GMSEMLEVHG EEEAESSVTV
701: TFNQFLAMFD DPDWGFGIMS TILKLEANDR NRHGNQVCSV CRYPVIGSRF KEVKARFSLC NQCYGEGKVP PSFKQEEYKF REYESEAEAM KAKCVCFSMQ
801: SHKKAIAT
Arabidopsis Description
Uncharacterized TPR repeat-containing protein At1g05150 [Source:UniProtKB/Swiss-Prot;Acc:O23052]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.