Factsheet for GSMUA_Achr10P19420_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028533_P001	Maize	mitochondrion	67.67	72.5
Os03t0263900-01	Rice	plasma membrane	67.44	71.58
EER95134	Sorghum	mitochondrion	67.0	71.53
Zm00001d047855_P001	Maize	mitochondrion	66.67	71.17
HORVU4Hr1G061170.3	Barley	cytosol, mitochondrion, nucleus	66.33	70.82
TraesCS4D01G215500.1	Wheat	mitochondrion	66.0	70.55
TraesCS4A01G089400.1	Wheat	mitochondrion	65.44	69.95
TraesCS4B01G215000.1	Wheat	cytosol, mitochondrion	65.33	69.83
VIT_18s0001g13570.t01	Wine grape	cytosol	61.89	69.71
KRH33574	Soybean	cytosol	61.0	68.45
KRG90336	Soybean	nucleus	60.33	67.71
Solyc04g081050.1.1	Tomato	cytosol	60.0	67.33
AT1G05150.1	Thale cress	cytosol	59.89	66.71
AT2G32450.1	Thale cress	cytosol	58.67	65.84
Bra015393.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	59.22	65.72
CDY46833	Canola	cytosol, mitochondrion, nucleus, plastid	58.89	65.59
PGSC0003DMT400009639	Potato	cytosol	57.22	60.59
Zm00001d044204_P001	Maize	cytosol, peroxisome, plasma membrane, plastid	31.0	51.76
CDY55452	Canola	cytosol	12.11	49.1
GSMUA_Achr3P17280_001	Banana	cytosol	8.67	7.78
GSMUA_Achr3P22610_001	Banana	cytosol	7.33	7.19
GSMUA_Achr1P17080_001	Banana	cytosol	8.44	6.91

Protein Annotations

Gene3D:1.10.238.10	Gene3D:1.25.40.10	MapMan:35.1	InterPro:EF-hand-dom_pair	InterPro:EF_hand_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005509	GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
EnsemblPlantsGene:GSMUA_Achr10G19420_001	EnsemblPlants:GSMUA_Achr10P19420_001	EnsemblPlants:GSMUA_Achr10T19420_001	InterPro:IPR002048	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	UniProt:M0RJL7	PFAM:PF13432	PFscan:PS50005	PFscan:PS50222	PFscan:PS50293
PANTHER:PTHR45081	SMART:SM00028	SMART:SM00054	SUPFAM:SSF47473	SUPFAM:SSF48452	TMHMM:TMhelix
InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0002961630	SEG:seg	:

Description

Uncharacterized TPR repeat-containing protein At1g05150 [Source:GMGC_GENE;Acc:GSMUA_Achr10G19420_001]

Coordinates

chr10:+:25811465..25814660

Molecular Weight (calculated)

99534.1 Da

IEP (calculated)

7.284

GRAVY (calculated)

-0.203

Length

900 amino acids

Sequence
(BLAST)

001: MTIIIPIIRI LAAPCTKRER ERQTETERER FGIGKRMMAA AGGASGRGAR AEKVQRIFER FDANGDGGLN REEMAALVVA VNPRVKFSDE QISAILDEVF
101: RTYADFIASP HVGLTLAGLL RTYDDGAGDV DRDFDALGLR LSTDAGEGDD SAAGAASSDA GVVAESSSSQ PPRAAAPPWA VSPNNGIIFE SSWSLLDDLE
201: ILVKRLRSKQ LQRSATAGAG VGDNNNNSHF DSFSEAGWSR EIGGPSDSSE RRVPWDETSR DYLSFVKEVA VLRGRADGAR SREEAFDNHM VLGRGLYEHQ
301: LFRESLISFR RSCELQPTDA RSHFRTGNSL YAIGRHAEAK EEFLLALEAA EAGGAQSSDI LPQIHVNLGI AMEAEGMILG ACEHYREAAI LCPTHFRALK
401: LLGSALFGVG EYRAAEKALE EAIFLRQDYA DAHCDLGSTL HAMGEDERAI QEFQKAIDLR PGHVDALYNL GGLFMDAGRF PRASEMFTRV LSVRPNHWRA
501: QLNKAVALLG AGESDEAKRA LKEAFKMTRR VEVYDAIAHL KILQKKKKPK RNGTVGEGAY LVIEPSKFKR AGKKTTLRQD LAVALDIRAF QRVARLSRCD
601: VDLLKKEMNE TDVPISYSGG GEPEKSIRKA ALEVILRRLL RFLKPETFQG AVKAINEKVL SVLDATGSGR VDLGMFFAVL APICSGPTDK RKRAVFDSLI
701: WRPNNEGGVN IRRSDAITYI KLLRAVYIPS HGVSDMLEVH GESDPSMVSY AEFLEMFNDP DWGFGILGTL VKLEAGDRIR HGRHTCSICQ YPVIGSRFTE
801: IKLRFSLCNR CYSEGKVPSA FKKEEYTFKE YGSESEALKD KCTCFTLHST SLQWIIVVIH CLLMFDGSSS GLLLFVSLRM FPVSILLAFM LVITFSFTYF

Best Arabidopsis Sequence Match ( AT1G05150.1 )
(BLAST)

001: MATRGSRSEK VKRIFQQFDG NHDGGLNREE MAALVVAVNP RVKFSDEQIN AILDEVFRTY AEFIDPNKGL TYDGLLRTYD DGAGDVDRDF DALGLELNAD
101: ETTIKGSEAA SSSSITDERA VEAQKKQRTA AWAVSPNHGI VFDETWKLVD DLEILVKRLK SKQEKDGKLK ADNNNNNVDA FSDAGWSREL GPSSEISEKR
201: IYWEESSHDY GVFVKELGVL RSKADGARSR EEAFDGHMAI GRVLYEHQLF KEALVSFKRA CELQPTDVRP HFKAGNCLYV LGKCKESKDE FLLALEAAES
301: GGNQWAYLLP QIYVNLGIAL EGEGMVLSAC EYYREAAILC PTHFRALKLL GSALFGVGEY RAAVKALEEA IYLKPDYADA HCDLASSLHS MGEDERAIEV
401: FQRAIDLKPG HVDALYNLGG LYMDLGRFQR ASEMYTRVLT VWPNHWRAQL NKAVSLLGAG ETEEAKRALK EALKLTNRVE LHDAISHLKH LQKKKGKNNG
501: NGNGGEGPFI VVEPSKFKTV GEKTTLRPDL ATALQIRAFQ RVTRLGKCDV EAVRKEMRDN DVPVSYSGSG GPTKSIRKPN LEEILRRLLS SLKPDTFQGA
601: IKAINEKILA LLDDSGSGRV DMGMFYAVIA PLCGGHSDKR KRVAFDALLW RPVNEGSSQI TKTDAVKYIK LLRAIYIPSH GMSEMLEVHG EEEAESSVTV
701: TFNQFLAMFD DPDWGFGIMS TILKLEANDR NRHGNQVCSV CRYPVIGSRF KEVKARFSLC NQCYGEGKVP PSFKQEEYKF REYESEAEAM KAKCVCFSMQ
801: SHKKAIAT

Arabidopsis Description

Uncharacterized TPR repeat-containing protein At1g05150 [Source:UniProtKB/Swiss-Prot;Acc:O23052]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.