Factsheet for Zm00001d028533_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

extracellular: 20408568
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95134	Sorghum	mitochondrion	95.48	95.14
HORVU4Hr1G061170.3	Barley	cytosol, mitochondrion, nucleus	90.36	90.04
Zm00001d047855_P001	Maize	mitochondrion	90.24	89.92
Os03t0263900-01	Rice	plasma membrane	90.36	89.5
TraesCS4D01G215500.1	Wheat	mitochondrion	89.29	89.07
TraesCS4A01G089400.1	Wheat	mitochondrion	89.05	88.84
TraesCS4B01G215000.1	Wheat	cytosol, mitochondrion	88.57	88.36
VIT_18s0001g13570.t01	Wine grape	cytosol	65.36	68.71
GSMUA_Achr10P...	Banana	plasma membrane	72.5	67.67
KRG90336	Soybean	nucleus	63.69	66.71
KRH33574	Soybean	cytosol	63.45	66.46
Solyc04g081050.1.1	Tomato	cytosol	63.45	66.46
CDY46833	Canola	cytosol, mitochondrion, nucleus, plastid	63.81	66.34
Bra015393.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	63.93	66.21
AT1G05150.1	Thale cress	cytosol	63.21	65.72
AT2G32450.1	Thale cress	cytosol	62.26	65.21
Zm00001d044204_P001	Maize	cytosol, peroxisome, plasma membrane, plastid	39.64	61.78
PGSC0003DMT400009639	Potato	cytosol	61.07	60.35
CDY55452	Canola	cytosol	13.81	52.25
Zm00001d031337_P001	Maize	cytosol	3.93	26.83
Zm00001d050343_P001	Maize	cytosol	2.62	10.0
Zm00001d003691_P002	Maize	cytosol	2.14	8.37
Zm00001d031938_P001	Maize	plastid	8.33	7.68
Zm00001d016506_P003	Maize	cytosol	9.29	7.41
Zm00001d015678_P001	Maize	extracellular	0.6	3.29

Protein Annotations

Gene3D:1.10.238.10	Gene3D:1.25.40.10	EntrezGene:100281182	MapMan:35.1	UniProt:B6SSY1	InterPro:EF-hand-dom_pair
InterPro:EF_hand_dom	EMBL:EU955846	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	GO:GO:0005515
InterPro:IPR002048	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	ProteinID:ONL96276.1	PFAM:PF13432
PFAM:PF14559	PFscan:PS50005	PFscan:PS50222	PFscan:PS50293	PANTHER:PTHR45081	SMART:SM00028
SMART:SM00054	SUPFAM:SSF47473	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat
UniParc:UPI000182BBA5	EnsemblPlantsGene:Zm00001d028533	EnsemblPlants:Zm00001d028533_P001	EnsemblPlants:Zm00001d028533_T001	SEG:seg	:

Description

Calcium ion binding protein

Coordinates

chr1:+:38404713..38407235

Molecular Weight (calculated)

91751.9 Da

IEP (calculated)

6.316

GRAVY (calculated)

-0.258

Length

840 amino acids

Sequence
(BLAST)

001: MALSASAASA GRGSRAEKVR RIFERFDTNG DGGLDRNEMA ALVVAVNPRV KFSEDQISAI LDEVFHTYGE FILPDGRGLS LLGLLRTYDD GAGDVDRDFL
101: ALSLPAVDSD ASSPDIAAGD AAAHSSPPSG AAAAASLLDD HAKPLGAGGA APSVSSRAAV AAPAWATSPN HGIAFDSSWG LLDDLEILVK RLRSKQLRKG
201: SIDGAGNNNF DSFSEAGWSR EISGAADSAS TAAPWDETSR DYLTFVKELA VLRTRADASR SREEAFDNHM VIGRALSEHR LFRDALASFR RACELQPTDV
301: RPHFRAGNCL YALGRHAEAK EEYLLALEAA EAGGSQSADI LPQIHVNLGI AMEAEGMVLG ACEHYREAAI LCPSHARALK LLGSALFGVG EYRAAEKALE
401: EAIFLKEDYA DAHCDLGSAL HAVGEDDRAI QEFQTAIDLK PGHVDALYNL GGLNMDAGRF VRAAEMYTRV LSIRPNHWRA QLNKAVALLG QGESEEAKKA
501: LKDAFKMTQR VEVYDAISHL KTLQKKKPKP SKGKDDGQGE QAYVVVEASK FKRVGRKTTL RQDLANALDI RAFERMTKLG HCDVELLRKE MNETDVPISY
601: SGTGIPEKSI RKAALEVILR RLLSFLKPDT FQGAIKAINE RILSVLDASG SGRVDLGMFF ATIAPICSGP VDMRKRIVFD ALLWRPASEG SNGQIRRSDA
701: LTYIKLLRAV YIPTHGASDM LEMHGESDPT MVSYTEFLEM FNDPDWGFGI LSTLVKLEES DHIRHGRHTC SICLYPIIGS RFKETKHSFS LCNRCYSEGK
801: VPSAFKLEEY RFKEYGNESE ALIDKCMCFN LHSKKLEADA

Best Arabidopsis Sequence Match ( AT1G05150.1 )
(BLAST)

001: MATRGSRSEK VKRIFQQFDG NHDGGLNREE MAALVVAVNP RVKFSDEQIN AILDEVFRTY AEFIDPNKGL TYDGLLRTYD DGAGDVDRDF DALGLELNAD
101: ETTIKGSEAA SSSSITDERA VEAQKKQRTA AWAVSPNHGI VFDETWKLVD DLEILVKRLK SKQEKDGKLK ADNNNNNVDA FSDAGWSREL GPSSEISEKR
201: IYWEESSHDY GVFVKELGVL RSKADGARSR EEAFDGHMAI GRVLYEHQLF KEALVSFKRA CELQPTDVRP HFKAGNCLYV LGKCKESKDE FLLALEAAES
301: GGNQWAYLLP QIYVNLGIAL EGEGMVLSAC EYYREAAILC PTHFRALKLL GSALFGVGEY RAAVKALEEA IYLKPDYADA HCDLASSLHS MGEDERAIEV
401: FQRAIDLKPG HVDALYNLGG LYMDLGRFQR ASEMYTRVLT VWPNHWRAQL NKAVSLLGAG ETEEAKRALK EALKLTNRVE LHDAISHLKH LQKKKGKNNG
501: NGNGGEGPFI VVEPSKFKTV GEKTTLRPDL ATALQIRAFQ RVTRLGKCDV EAVRKEMRDN DVPVSYSGSG GPTKSIRKPN LEEILRRLLS SLKPDTFQGA
601: IKAINEKILA LLDDSGSGRV DMGMFYAVIA PLCGGHSDKR KRVAFDALLW RPVNEGSSQI TKTDAVKYIK LLRAIYIPSH GMSEMLEVHG EEEAESSVTV
701: TFNQFLAMFD DPDWGFGIMS TILKLEANDR NRHGNQVCSV CRYPVIGSRF KEVKARFSLC NQCYGEGKVP PSFKQEEYKF REYESEAEAM KAKCVCFSMQ
801: SHKKAIAT

Arabidopsis Description

Uncharacterized TPR repeat-containing protein At1g05150 [Source:UniProtKB/Swiss-Prot;Acc:O23052]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.