Factsheet for Os03t0263900-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 1
cytosol 2

Predictors

GFP

MS/MS

Papers

plasma membrane: 18260611
plasma membrane: 18557835
plasma membrane: 27800704
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 18557835 doi

SA Whiteman, TS Nühse, DA Ashford, D Sanders, FJ Maathuis

Department of Biology Area 9, University of York, York YO10 5DD, UK.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G061170.3	Barley	cytosol, mitochondrion, nucleus	90.68	91.22
EER95134	Sorghum	mitochondrion	89.98	90.51
TraesCS4D01G215500.1	Wheat	mitochondrion	89.74	90.38
Zm00001d028533_P001	Maize	mitochondrion	89.5	90.36
TraesCS4A01G089400.1	Wheat	mitochondrion	89.27	89.91
TraesCS4B01G215000.1	Wheat	cytosol, mitochondrion	89.15	89.79
Zm00001d047855_P001	Maize	mitochondrion	85.26	85.77
VIT_18s0001g13570.t01	Wine grape	cytosol	64.74	68.71
GSMUA_Achr10P...	Banana	plasma membrane	71.58	67.44
Solyc04g081050.1.1	Tomato	cytosol	63.68	67.33
KRH33574	Soybean	cytosol	63.33	66.96
KRG90336	Soybean	nucleus	62.97	66.58
CDY46833	Canola	cytosol, mitochondrion, nucleus, plastid	63.09	66.21
Bra015393.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	63.21	66.09
AT1G05150.1	Thale cress	cytosol	62.62	65.72
AT2G32450.1	Thale cress	cytosol	61.44	64.96
PGSC0003DMT400009639	Potato	cytosol	60.97	60.82
CDY55452	Canola	cytosol	13.8	52.7
Os02t0489550-00	Rice	endoplasmic reticulum, golgi	7.67	9.94
Os08t0559300-01	Rice	cytosol	8.49	7.77
Os01t0915400-00	Rice	plastid	1.06	5.77

Protein Annotations

Gene3D:1.10.238.10	Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:4332338	ProteinID:ABF95116.1	ProteinID:BAF11552.1
ProteinID:BAS83385.1	InterPro:EF-hand-dom_pair	InterPro:EF_hand_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509
GO:GO:0005515	InterPro:IPR002048	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	EnsemblPlantsGene:Os03g0263900
EnsemblPlants:Os03t0263900-01	PFAM:PF13432	PFAM:PF14559	PFscan:PS50005	PFscan:PS50222	PFscan:PS50293
PANTHER:PTHR45081	UniProt:Q10NP2	SMART:SM00028	SUPFAM:SSF47473	SUPFAM:SSF48452	InterPro:TPR-contain_dom
InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0000DB458C	RefSeq:XP_015631391.1	SEG:seg	:

Description

EF-HAND 2 domain containing protein. (Os03t0263900-01)

Coordinates

chr3:+:8679164..8682334

Molecular Weight (calculated)

92433.5 Da

IEP (calculated)

6.518

GRAVY (calculated)

-0.298

Length

848 amino acids

Sequence
(BLAST)

001: MALSASAAAS AGRGARAEKV GRIFERFDAN GDGGLDRDEM AALVVAVNPR VKFSEDQISA ILDEVFRTYA EFILPGGRGL SLPGLLRTYD DGAGDVDRDF
101: LALSLPPLES GESSPEIAAG DPAAASSPPS GAAAAASLLD DHIKPLGAAG GAPSSSSRAA AAAPAWATSP SHGIAFDSSW ALLDDLEILV KRLRSKQLRR
201: TSSIDTINGS GGAGNNNFDS FSEAGWSREI SGQADSASTA APWDETSRDY LTFVKELAVL RTRADASRSR EEAFDNHMVI GRALSEHRLF RDALSSFRRA
301: CELQPTDVRP HFRAGNCLYA LGRHSEAKEE YLLALEAAEA GGSQSADILP QIHVNLGIAM EAEGMVLGAC EHYREAAILC PSHARALKLL GSALFGVGEY
401: RAAEKALEEA IFLKPDYADA HCDLGSALHA IGDDDRAVQE FQKAIDLKPG HVDALYNLGG LNMDAGRFVR AAEMYTRVLS IRPNHWRAQL NKAVALLGQG
501: ESEEAKKALK EAFKMTQRVE VYDAISHLKT LQKKKPKPPK GKDDSQGEEA FVVVEPSKFK RVGRKTTLRQ DLANALDIRA FEKTTKLGRC DAELLRKEMN
601: ETDVPISYSG AGNPEKSIRK AALEVILHRL LSFLKPDTFQ GSVKAINERI LSVLDASGSG RVDLGMFFAI IAPICSGPVD KRKRVVFDAL LWRPASEGSR
701: GQIRRSDALS YIKLLRAVYI PTHGASDMLE MHGESDPTMV SYTEFLEMFN DPDWGFGILS TLVKLEDSDH IRHGRHTCSI CRYPIIGSRF KETKHSFSLC
801: NRCYSEGKVP SAFKLDEYRF KEYGNESEAL IDKCMCFNLH SKKLEADT

Best Arabidopsis Sequence Match ( AT1G05150.1 )
(BLAST)

001: MATRGSRSEK VKRIFQQFDG NHDGGLNREE MAALVVAVNP RVKFSDEQIN AILDEVFRTY AEFIDPNKGL TYDGLLRTYD DGAGDVDRDF DALGLELNAD
101: ETTIKGSEAA SSSSITDERA VEAQKKQRTA AWAVSPNHGI VFDETWKLVD DLEILVKRLK SKQEKDGKLK ADNNNNNVDA FSDAGWSREL GPSSEISEKR
201: IYWEESSHDY GVFVKELGVL RSKADGARSR EEAFDGHMAI GRVLYEHQLF KEALVSFKRA CELQPTDVRP HFKAGNCLYV LGKCKESKDE FLLALEAAES
301: GGNQWAYLLP QIYVNLGIAL EGEGMVLSAC EYYREAAILC PTHFRALKLL GSALFGVGEY RAAVKALEEA IYLKPDYADA HCDLASSLHS MGEDERAIEV
401: FQRAIDLKPG HVDALYNLGG LYMDLGRFQR ASEMYTRVLT VWPNHWRAQL NKAVSLLGAG ETEEAKRALK EALKLTNRVE LHDAISHLKH LQKKKGKNNG
501: NGNGGEGPFI VVEPSKFKTV GEKTTLRPDL ATALQIRAFQ RVTRLGKCDV EAVRKEMRDN DVPVSYSGSG GPTKSIRKPN LEEILRRLLS SLKPDTFQGA
601: IKAINEKILA LLDDSGSGRV DMGMFYAVIA PLCGGHSDKR KRVAFDALLW RPVNEGSSQI TKTDAVKYIK LLRAIYIPSH GMSEMLEVHG EEEAESSVTV
701: TFNQFLAMFD DPDWGFGIMS TILKLEANDR NRHGNQVCSV CRYPVIGSRF KEVKARFSLC NQCYGEGKVP PSFKQEEYKF REYESEAEAM KAKCVCFSMQ
801: SHKKAIAT

Arabidopsis Description

Uncharacterized TPR repeat-containing protein At1g05150 [Source:UniProtKB/Swiss-Prot;Acc:O23052]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.