Factsheet for Bra015393.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46833	Canola	cytosol, mitochondrion, nucleus, plastid	98.52	98.89
AT1G05150.1	Thale cress	cytosol	90.63	90.97
VIT_18s0001g13570.t01	Wine grape	cytosol	76.82	77.97
KRH33574	Soybean	cytosol	76.33	77.18
KRG90336	Soybean	nucleus	76.2	77.06
Solyc04g081050.1.1	Tomato	cytosol	75.83	76.68
PGSC0003DMT400009639	Potato	cytosol	72.87	69.53
Zm00001d028533_P001	Maize	mitochondrion	66.21	63.93
EER95134	Sorghum	mitochondrion	66.21	63.7
HORVU4Hr1G061170.3	Barley	cytosol, mitochondrion, nucleus	65.84	63.35
Os03t0263900-01	Rice	plasma membrane	66.09	63.21
Zm00001d047855_P001	Maize	mitochondrion	65.6	63.11
TraesCS4D01G215500.1	Wheat	mitochondrion	65.47	63.06
TraesCS4A01G089400.1	Wheat	mitochondrion	64.86	62.47
TraesCS4B01G215000.1	Wheat	cytosol, mitochondrion	64.86	62.47
GSMUA_Achr10P...	Banana	plasma membrane	65.72	59.22
Zm00001d044204_P001	Maize	cytosol, peroxisome, plasma membrane, plastid	30.58	46.01
Bra034832.1-P	Field mustard	cytosol	9.0	7.99
Bra040144.1-P	Field mustard	cytosol, mitochondrion	9.25	7.69
Bra001408.1-P	Field mustard	cytosol	6.04	5.44

Protein Annotations

Gene3D:1.10.238.10	Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlantsGene:Bra015393	EnsemblPlants:Bra015393.1	EnsemblPlants:Bra015393.1-P
ncoils:Coil	InterPro:EF-hand-dom_pair	InterPro:EF_hand_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768
GO:GO:0005794	GO:GO:0005802	GO:GO:0005886	GO:GO:0009506	GO:GO:0016020	InterPro:IPR002048
InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	UniProt:M4DFX0	PFAM:PF13414	PFAM:PF13432
PFscan:PS50005	PFscan:PS50222	PFscan:PS50293	PANTHER:PTHR45081	SMART:SM00028	SUPFAM:SSF47473
SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0002543ACE	SEG:seg

Description

AT1G05150 (E=0.0) | calcium-binding EF hand family protein

Coordinates

chrA10:+:2101791..2104226

Molecular Weight (calculated)

90313.4 Da

IEP (calculated)

7.136

GRAVY (calculated)

-0.433

Length

811 amino acids

Sequence
(BLAST)

001: MATRGSRSEK VKRIFQQFDG NRDGGLNREE MAALVVAVNP RVKFSDEQIN AILDEVFRTY AEFIDPAKGL TYDGLLRTYD DGAGDVDRDF DALGLELNPE
101: ETIITKGASE ASSSSIADER AVEAQKKQRT AAWAVSPNHG IVFDDTWKLV DDLEILIKRL KSKQEKVNNN SNNSNNNNAD AFSDAGWSRE LGPSTELSDK
201: RIYWEESSHD YNVFVKELGV LRSKADGARS REEAFDGHMA IGRVLYEHQL FKEALVSFKR ACELQPTDVR PHFKAGNCLY VLGKCKESKE EFLLALEAAE
301: SGGNQWAYLL PQIYVNLGIS LEGEGMVLSA CEYYREAAIL CPTHYRALKL LGSALFGVGE YRAAVKALEE AIYLKPDYAD AHCDLGSSLH SMGEDERAIE
401: VFQRAIDLKP GHVDALYNLG GLYMDLGRFQ RASEMYTRVL AVWPNHWRAQ LNKAVSLLGA GETEEAKRAL KEALKLTNRV ELHDAVSHLK HLQKKKKGKK
501: NGSGNGGEGG PFIVVEASKF KTVGEKTTLR PDLATALQVR AFQKVTRLGK CDVEGVRKEM RDNDVPVSYS GSGGPTKSIR KPNLEEILRR LLVSLKPETF
601: QGAIKAINER ILSVLDDSGS GRVDMGMFYA VIAPLCGGHS DKRKRVAFEA LLWRPVNEGS SQITKTDADK YIKLLRAIYI PSHGMSEMLE VHGEEEAGSS
701: VTVTFNQFLA MFDDPDWGFG IMSTILKLEG NDRNRHGNHV CSVCRYPIIG SRFKEVKARF SLCNQCYSEG KVPPSFKQEE YRFREYGSEA EAMKAKCVCF
801: SGQSHKKPIA A

Best Arabidopsis Sequence Match ( AT1G05150.1 )
(BLAST)

001: MATRGSRSEK VKRIFQQFDG NHDGGLNREE MAALVVAVNP RVKFSDEQIN AILDEVFRTY AEFIDPNKGL TYDGLLRTYD DGAGDVDRDF DALGLELNAD
101: ETTIKGSEAA SSSSITDERA VEAQKKQRTA AWAVSPNHGI VFDETWKLVD DLEILVKRLK SKQEKDGKLK ADNNNNNVDA FSDAGWSREL GPSSEISEKR
201: IYWEESSHDY GVFVKELGVL RSKADGARSR EEAFDGHMAI GRVLYEHQLF KEALVSFKRA CELQPTDVRP HFKAGNCLYV LGKCKESKDE FLLALEAAES
301: GGNQWAYLLP QIYVNLGIAL EGEGMVLSAC EYYREAAILC PTHFRALKLL GSALFGVGEY RAAVKALEEA IYLKPDYADA HCDLASSLHS MGEDERAIEV
401: FQRAIDLKPG HVDALYNLGG LYMDLGRFQR ASEMYTRVLT VWPNHWRAQL NKAVSLLGAG ETEEAKRALK EALKLTNRVE LHDAISHLKH LQKKKGKNNG
501: NGNGGEGPFI VVEPSKFKTV GEKTTLRPDL ATALQIRAFQ RVTRLGKCDV EAVRKEMRDN DVPVSYSGSG GPTKSIRKPN LEEILRRLLS SLKPDTFQGA
601: IKAINEKILA LLDDSGSGRV DMGMFYAVIA PLCGGHSDKR KRVAFDALLW RPVNEGSSQI TKTDAVKYIK LLRAIYIPSH GMSEMLEVHG EEEAESSVTV
701: TFNQFLAMFD DPDWGFGIMS TILKLEANDR NRHGNQVCSV CRYPVIGSRF KEVKARFSLC NQCYGEGKVP PSFKQEEYKF REYESEAEAM KAKCVCFSMQ
801: SHKKAIAT

Arabidopsis Description

Uncharacterized TPR repeat-containing protein At1g05150 [Source:UniProtKB/Swiss-Prot;Acc:O23052]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.