Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g081050.1.1 | Tomato | cytosol | 89.88 | 95.26 |
| VIT_18s0001g13570.t01 | Wine grape | cytosol | 71.41 | 75.97 |
| CDY46833 | Canola | cytosol, mitochondrion, nucleus, plastid | 69.65 | 73.27 |
| KRH33574 | Soybean | cytosol | 68.82 | 72.94 |
| Bra015393.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 69.53 | 72.87 |
| KRG90336 | Soybean | nucleus | 68.47 | 72.57 |
| AT2G32450.1 | Thale cress | cytosol | 68.0 | 72.07 |
| AT1G05150.1 | Thale cress | cytosol | 68.24 | 71.78 |
| EER95134 | Sorghum | mitochondrion | 60.71 | 61.21 |
| Zm00001d028533_P001 | Maize | mitochondrion | 60.35 | 61.07 |
| Os03t0263900-01 | Rice | plasma membrane | 60.82 | 60.97 |
| HORVU4Hr1G061170.3 | Barley | cytosol, mitochondrion, nucleus | 60.24 | 60.74 |
| Zm00001d047855_P001 | Maize | mitochondrion | 60.24 | 60.74 |
| TraesCS4D01G215500.1 | Wheat | mitochondrion | 59.76 | 60.33 |
| TraesCS4A01G089400.1 | Wheat | mitochondrion | 59.65 | 60.21 |
| TraesCS4B01G215000.1 | Wheat | cytosol, mitochondrion | 59.41 | 59.98 |
| GSMUA_Achr10P... | Banana | plasma membrane | 60.59 | 57.22 |
| CDY55452 | Canola | cytosol | 14.94 | 57.21 |
| Zm00001d044204_P001 | Maize | cytosol, peroxisome, plasma membrane, plastid | 27.18 | 42.86 |
| PGSC0003DMT400040741 | Potato | cytosol | 10.47 | 9.09 |
| PGSC0003DMT400023083 | Potato | cytosol | 8.82 | 8.06 |
Protein Annotations
| Gene3D:1.10.238.10 | Gene3D:1.25.40.10 | MapMan:35.1 | InterPro:EF-hand-dom_pair | InterPro:EF_hand_dom | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005509 | GO:GO:0005515 | InterPro:IPR002048 | InterPro:IPR011990 | InterPro:IPR013026 |
| InterPro:IPR019734 | UniProt:M0ZWP6 | PFAM:PF13181 | PFAM:PF13432 | EnsemblPlantsGene:PGSC0003DMG400003764 | PGSC:PGSC0003DMG400003764 |
| EnsemblPlants:PGSC0003DMT400009639 | PFscan:PS50005 | PFscan:PS50222 | PFscan:PS50293 | SMART:SM00028 | SUPFAM:SSF47473 |
| SUPFAM:SSF48452 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | InterPro:TPR_repeat | UniParc:UPI000296DB4E | SEG:seg |
Description
Tetratricopeptide repeat protein, tpr [Source:PGSC_GENE;Acc:PGSC0003DMG400003764]
Coordinates
chr4:-:70466864..70469665
Molecular Weight (calculated)
94626.3 Da
IEP (calculated)
6.184
GRAVY (calculated)
-0.413
Length
850 amino acids
Sequence
(BLAST)
(BLAST)
001: MASRGSRSEK VKRIFQQFDG NHDGGLNREE MAALVVAVNP RVKFSEEQIN AILDEVFRTY SEFIDGEKGL TYEGLLRTYD DGAGDVDRDF DALGLELKPE
101: DNAGTSIAAE EASSSSIADE RVMEPHKKQR TAAWAASPNH GIVFDDTWKL VDDLEILIKR LKSKQSKDGK LKNDNSDVYS EGWSRELGPS TEITDKRVNW
201: EETGHDYAVF VKELGVLRSR ADGSRSREEA FDGHMAIGRV LYDQHLFKEA LVSFKRACEL QPADVRPHFR AGNCLYVLGR HSESKEEFLL ALEAAEAGGS
301: QWAYLLPQIH VNLGIALEGE VNFSSICRLP QIRPKTMSES SCDSISNSIR ALKLLGSALF GVGEYKAAVK ALEEAIYMKS DYADAHCDLA SSLHAMGDDD
401: NAIEYKAAVK ALEEAIYMKS DYADAHCDLA SALHAMGDDD NAIKEFQRAI DLKPGHVDAL YNLGGLYMDM GRYQRASEMY TRVLSVWPNH WRAHLNKAVA
501: LLGAGETEEA KKALKEALKM TNRVELHDAV AHLKQLQKKK LKGNGGGNGE EAFIIVEPSK FKSVGEKTTL RADLSTALDI RSFQRITRLN RCDVDQIKKE
601: INETDVPMSY SGGVPEKSIR KASLEEILHR LLKFLKPETF IGAVKAINQK VLSVLDESES GRLDLGMFFA VLAPVCGGSP DKRKRIAYEA LLWRPVNEGS
701: SQIRKTDAQR YIKLLRAIYI PSQGASEMLE IHGEMDTSLV SLAEFTAMFD DPDWGFGIMS TLLKLEMGDR NRHGSHVCAT CRYPIIGSRF KEIKSHFSLC
801: SQCYSEGKVP PTSKLEEYRF KEYASEAEAV KDKCMWFGIH SKGSSSPAAS
101: DNAGTSIAAE EASSSSIADE RVMEPHKKQR TAAWAASPNH GIVFDDTWKL VDDLEILIKR LKSKQSKDGK LKNDNSDVYS EGWSRELGPS TEITDKRVNW
201: EETGHDYAVF VKELGVLRSR ADGSRSREEA FDGHMAIGRV LYDQHLFKEA LVSFKRACEL QPADVRPHFR AGNCLYVLGR HSESKEEFLL ALEAAEAGGS
301: QWAYLLPQIH VNLGIALEGE VNFSSICRLP QIRPKTMSES SCDSISNSIR ALKLLGSALF GVGEYKAAVK ALEEAIYMKS DYADAHCDLA SSLHAMGDDD
401: NAIEYKAAVK ALEEAIYMKS DYADAHCDLA SALHAMGDDD NAIKEFQRAI DLKPGHVDAL YNLGGLYMDM GRYQRASEMY TRVLSVWPNH WRAHLNKAVA
501: LLGAGETEEA KKALKEALKM TNRVELHDAV AHLKQLQKKK LKGNGGGNGE EAFIIVEPSK FKSVGEKTTL RADLSTALDI RSFQRITRLN RCDVDQIKKE
601: INETDVPMSY SGGVPEKSIR KASLEEILHR LLKFLKPETF IGAVKAINQK VLSVLDESES GRLDLGMFFA VLAPVCGGSP DKRKRIAYEA LLWRPVNEGS
701: SQIRKTDAQR YIKLLRAIYI PSQGASEMLE IHGEMDTSLV SLAEFTAMFD DPDWGFGIMS TLLKLEMGDR NRHGSHVCAT CRYPIIGSRF KEIKSHFSLC
801: SQCYSEGKVP PTSKLEEYRF KEYASEAEAV KDKCMWFGIH SKGSSSPAAS
001: MATRGSRSEK VKRIFQQFDG NHDGGLNREE MAALVVAVNP RVKFSDEQIN AILDEVFRTY AEFIDPNKGL TYDGLLRTYD DGAGDVDRDF DALGLELNAD
101: ETTIKGSEAA SSSSITDERA VEAQKKQRTA AWAVSPNHGI VFDETWKLVD DLEILVKRLK SKQEKDGKLK ADNNNNNVDA FSDAGWSREL GPSSEISEKR
201: IYWEESSHDY GVFVKELGVL RSKADGARSR EEAFDGHMAI GRVLYEHQLF KEALVSFKRA CELQPTDVRP HFKAGNCLYV LGKCKESKDE FLLALEAAES
301: GGNQWAYLLP QIYVNLGIAL EGEGMVLSAC EYYREAAILC PTHFRALKLL GSALFGVGEY RAAVKALEEA IYLKPDYADA HCDLASSLHS MGEDERAIEV
401: FQRAIDLKPG HVDALYNLGG LYMDLGRFQR ASEMYTRVLT VWPNHWRAQL NKAVSLLGAG ETEEAKRALK EALKLTNRVE LHDAISHLKH LQKKKGKNNG
501: NGNGGEGPFI VVEPSKFKTV GEKTTLRPDL ATALQIRAFQ RVTRLGKCDV EAVRKEMRDN DVPVSYSGSG GPTKSIRKPN LEEILRRLLS SLKPDTFQGA
601: IKAINEKILA LLDDSGSGRV DMGMFYAVIA PLCGGHSDKR KRVAFDALLW RPVNEGSSQI TKTDAVKYIK LLRAIYIPSH GMSEMLEVHG EEEAESSVTV
701: TFNQFLAMFD DPDWGFGIMS TILKLEANDR NRHGNQVCSV CRYPVIGSRF KEVKARFSLC NQCYGEGKVP PSFKQEEYKF REYESEAEAM KAKCVCFSMQ
801: SHKKAIAT
101: ETTIKGSEAA SSSSITDERA VEAQKKQRTA AWAVSPNHGI VFDETWKLVD DLEILVKRLK SKQEKDGKLK ADNNNNNVDA FSDAGWSREL GPSSEISEKR
201: IYWEESSHDY GVFVKELGVL RSKADGARSR EEAFDGHMAI GRVLYEHQLF KEALVSFKRA CELQPTDVRP HFKAGNCLYV LGKCKESKDE FLLALEAAES
301: GGNQWAYLLP QIYVNLGIAL EGEGMVLSAC EYYREAAILC PTHFRALKLL GSALFGVGEY RAAVKALEEA IYLKPDYADA HCDLASSLHS MGEDERAIEV
401: FQRAIDLKPG HVDALYNLGG LYMDLGRFQR ASEMYTRVLT VWPNHWRAQL NKAVSLLGAG ETEEAKRALK EALKLTNRVE LHDAISHLKH LQKKKGKNNG
501: NGNGGEGPFI VVEPSKFKTV GEKTTLRPDL ATALQIRAFQ RVTRLGKCDV EAVRKEMRDN DVPVSYSGSG GPTKSIRKPN LEEILRRLLS SLKPDTFQGA
601: IKAINEKILA LLDDSGSGRV DMGMFYAVIA PLCGGHSDKR KRVAFDALLW RPVNEGSSQI TKTDAVKYIK LLRAIYIPSH GMSEMLEVHG EEEAESSVTV
701: TFNQFLAMFD DPDWGFGIMS TILKLEANDR NRHGNQVCSV CRYPVIGSRF KEVKARFSLC NQCYGEGKVP PSFKQEEYKF REYESEAEAM KAKCVCFSMQ
801: SHKKAIAT
Arabidopsis Description
Uncharacterized TPR repeat-containing protein At1g05150 [Source:UniProtKB/Swiss-Prot;Acc:O23052]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.