Factsheet for PGSC0003DMT400023083

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400002842
PGSC0003DMT400048370

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11540.1	PGSC0003DMT400002842	AT1G22770.1	15155885
AT3G11540.1	PGSC0003DMT400048370	AT1G22770.1	15155885

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g010180.2.1	Tomato	extracellular	98.17	98.17
VIT_08s0007g02910.t01	Wine grape	cytosol	81.95	83.48
KRH72262	Soybean	cytosol	80.88	81.14
KRH67954	Soybean	cytosol	78.3	79.33
AT3G11540.1	Thale cress	cytosol	76.69	78.12
CDY08515	Canola	cytosol	75.72	77.64
KRH32780	Soybean	cytosol	80.13	77.47
CDY01033	Canola	cytosol	75.4	76.81
Bra034832.1-P	Field mustard	cytosol	75.3	76.7
GSMUA_Achr3P22610_001	Banana	cytosol	74.76	75.82
EES14080	Sorghum	cytosol	74.22	75.52
Zm00001d031938_P001	Maize	plastid	73.47	75.08
KRG96211	Soybean	plastid	78.09	74.87
Os08t0559300-01	Rice	cytosol	73.68	74.0
TraesCS6B01G136300.1	Wheat	cytosol, plastid	73.36	72.81
TraesCS6D01G095600.1	Wheat	cytosol	73.58	72.79
TraesCS6A01G107700.1	Wheat	cytosol	73.04	72.19
HORVU6Hr1G019280.3	Barley	cytosol	73.04	70.25
CDX73870	Canola	cytosol	65.95	68.22
Bra001408.1-P	Field mustard	cytosol	65.95	68.22
CDY00739	Canola	cytosol	74.54	64.92
PGSC0003DMT400040741	Potato	cytosol	24.17	22.98
PGSC0003DMT400009639	Potato	cytosol	8.06	8.82

Protein Annotations

KEGG:00514+2.4.1.255	Gene3D:1.25.40.10	EntrezGene:102593198	MapMan:18.1.2.2.1	Gene3D:3.40.50.11380	Gene3D:3.40.50.2000
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009719	GO:GO:0009736	GO:GO:0009938	GO:GO:0009987
GO:GO:2000377	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	UniProt:M1AHR2	InterPro:OGT/SEC/SPY_C
PFAM:PF00515	PFAM:PF13181	PFAM:PF13374	PFAM:PF13844	EnsemblPlantsGene:PGSC0003DMG400008939	PGSC:PGSC0003DMG400008939
EnsemblPlants:PGSC0003DMT400023083	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR44835	SMART:SM00028	SMART:SM00671
SUPFAM:SSF48452	InterPro:Sel1-like	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_1	InterPro:TPR_repeat
UniParc:UPI00029665DF	RefSeq:XP_006341079.1	RefSeq:XP_006341080.1	SEG:seg	:	:

Description

UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Source:PGSC_GENE;Acc:PGSC0003DMG400008939]

Coordinates

chr9:-:2376254..2391773

Molecular Weight (calculated)

103607.0 Da

IEP (calculated)

5.973

GRAVY (calculated)

-0.262

Length

931 amino acids

Sequence
(BLAST)

001: MAWTEKDVEN GKESDSLGNN GFLKGGQSSS GSKGSPGRIS HVKKIFEDKD AITYANILRS RNKFVDALAI YESVLQKDSE SIESLIGKGI CLQMQNMGRL
101: AFESFSEAIK VDPQNACALT HCGILYKDEG RLVEAAESYE KALKADPSYK PAAECLAIVL TDIGTSLKLA GNTQEGIQKY YEAIKIDSHY APAYYNLGVV
201: YSEMMQYDMA LNCYEKAALE RPMYAEAYCN MGVIFKNRGD LESAIACYER CLAVSPNFEI AKNNMAIALT DLGTKVKLEG DINQGVAYYK KALCYNWHYA
301: DAMYNLGVAY GEMLKFDMAI VFYELAFHFN PHCAEACNNL GVIYKDRDNL DKAVECYQMA LSIKPSFSQS LNNLGVVYTV QGKMDAAASM IEKAIIANPT
401: YAEAYNNLGV LYRDAGNISL AIEAYEQCLK IDPDSRNAGQ NRLLAMNYIN EGTDDKLYEA HRDWGRRFMK LYPQYTSWDN SKVPERPLVI GYVSPDYFTH
501: SVSYFIEAPL AHHDYTNYKV VVYSSVVKAD AKTNRFRDKV MKKGGLWRDI YGIDEKKVSS MIREDKVDIM VELTGHTANN KLGTMACRPA PVQVTWIGYP
601: NTTGLPTIDY RITDAMADPP NAKQKHVEEL VRLPNSFLCY TPSPEAGPVC PAPALSNGFV TFGSFNNLAK ITPKVLQVWA RILSAVPHSR LIVKCKPFCC
701: DSVRQRFLSI LEQLGLEPQR VDLLPLILLN HDHMQAYSLM DISLDTFPYA GTTTTCESLY MGVPCVTMGG SVHAHNVGVS LLKTVGLENL VARNEDEYVE
801: SAIQLASDVT SLSNLRMSLR ELMSKSPLCD GAKFTRNIES IYRSMWRRYC DGDVPSLRRM ELLQQQQTKT ESVVPEESPV NSLERTITSA PTDGSIKENG
901: FTTIPALVLN SSTSEENGVQ SNQNGNHGNL S

Best Arabidopsis Sequence Match ( AT3G11540.1 )
(BLAST)

001: MVGLEDDTER ERSPVVENGF SNGSRSSSSS AGVLSPSRKV TQGNDTLSYA NILRARNKFA DALALYEAML EKDSKNVEAH IGKGICLQTQ NKGNLAFDCF
101: SEAIRLDPHN ACALTHCGIL HKEEGRLVEA AESYQKALMA DASYKPAAEC LAIVLTDLGT SLKLAGNTQE GIQKYYEALK IDPHYAPAYY NLGVVYSEMM
201: QYDNALSCYE KAALERPMYA EAYCNMGVIY KNRGDLEMAI TCYERCLAVS PNFEIAKNNM AIALTDLGTK VKLEGDVTQG VAYYKKALYY NWHYADAMYN
301: LGVAYGEMLK FDMAIVFYEL AFHFNPHCAE ACNNLGVLYK DRDNLDKAVE CYQMALSIKP NFAQSLNNLG VVYTVQGKMD AAASMIEKAI LANPTYAEAF
401: NNLGVLYRDA GNITMAIDAY EECLKIDPDS RNAGQNRLLA MNYINEGLDD KLFEAHRDWG WRFTRLHPQY TSWDNLKDPE RPITIGYISP DFFTHSVSYF
501: IEAPLTHHDY TKYKVVVYSA VVKADAKTYR FRDKVLKKGG VWKDIYGIDE KKIASMVRED KIDILVELTG HTANNKLGTM ACRPAPVQVT WIGYPNTTGL
601: PTVDYRITDS LADPPDTKQK QVEELVRLPD CFLCYTPSPE AGPVCPTPAL SNGFVTFGSF NNLAKITPKV LQVWARILCA VPNSRLVVKC KPFCCDSIRQ
701: RFLTTLEQLG LESKRVDLLP LILFNHDHMQ AYSLMDISLD TFPYAGTTTT CESLYMGVPC VTMAGSVHAH NVGVSLLTKV GLGHLVAKNE DEYVQLSVDL
801: ASDVTALSKL RMSLRDLMAG SPVCNGPSFA VGLESAYRNM WKKYCKGEVP SLRRMEMLQK EVHDDPLISK DLGPSRVSVT GEATPSLKAN GSAPVPSSLP
901: TQSPQLSKRM DSTS

Arabidopsis Description

SPYProbable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Source:UniProtKB/Swiss-Prot;Acc:Q96301]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.