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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY08515 Canola cytosol 94.31 94.93
Bra034832.1-P Field mustard cytosol 91.58 91.58
CDY01033 Canola cytosol 90.7 90.7
Bra001408.1-P Field mustard cytosol 82.82 84.11
CDX73870 Canola cytosol 82.82 84.11
VIT_08s0007g02910.t01 Wine grape cytosol 81.95 81.95
CDY00739 Canola cytosol 90.92 77.74
Solyc09g010180.2.1 Tomato extracellular 78.23 76.8
PGSC0003DMT400023083 Potato cytosol 78.12 76.69
GSMUA_Achr3P22610_001 Banana cytosol 75.6 75.27
Zm00001d031938_P001 Maize plastid 74.84 75.08
EES14080 Sorghum cytosol 74.4 74.32
Os08t0559300-01 Rice cytosol 74.73 73.68
TraesCS6B01G136300.1 Wheat cytosol, plastid 74.18 72.28
TraesCS6D01G095600.1 Wheat cytosol 74.29 72.16
TraesCS6A01G107700.1 Wheat cytosol 73.96 71.76
KRH38138 Soybean cytosol 14.55 70.37
HORVU6Hr1G019280.3 Barley cytosol 74.51 70.35
AT3G04240.1 Thale cress cytosol 24.73 23.13
AT1G05150.1 Thale cress cytosol 7.88 8.91
AT2G32450.1 Thale cress cytosol 7.22 8.23
Protein Annotations
KEGG:00514+2.4.1.255Gene3D:1.25.40.10MapMan:18.1.2.2.1Gene3D:3.40.50.11380Gene3D:3.40.50.2000EntrezGene:820327
ProteinID:AAG51433.1ProteinID:AEE75060.1EMBL:AK220931EMBL:AK221192EMBL:AK221314ArrayExpress:AT3G11540
EnsemblPlantsGene:AT3G11540RefSeq:AT3G11540TAIR:AT3G11540RefSeq:AT3G11540-TAIR-GEnsemblPlants:AT3G11540.1TAIR:AT3G11540.1
Unigene:At.17656GO:GO:0000003GO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0005515
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005737GO:GO:0005829
GO:GO:0005975GO:GO:0006464GO:GO:0006486GO:GO:0007154GO:GO:0007165GO:GO:0007275
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009719GO:GO:0009736GO:GO:0009740
GO:GO:0009791GO:GO:0009908GO:GO:0009938GO:GO:0009987GO:GO:0016262GO:GO:0016740
GO:GO:0016757GO:GO:0019538GO:GO:0030154GO:GO:0048511GO:GO:2000377InterPro:IPR011990
InterPro:IPR013026InterPro:IPR019734EMBL:KJ138828RefSeq:NP_187761.1InterPro:OGT/SEC/SPY_CPFAM:PF00515
PFAM:PF13374PFAM:PF13432PFAM:PF13844PO:PO:0000013PO:PO:0000037PO:PO:0000230
PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507
PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123
PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009
PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032
PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100
PO:PO:0020137PO:PO:0025022PO:PO:0025281PFscan:PS50005PFscan:PS50293PANTHER:PTHR44835
UniProt:Q96301SMART:SM00028SMART:SM00671Symbol:SPYSUPFAM:SSF48452InterPro:Sel1-like
InterPro:TPR-contain_domInterPro:TPR-like_helical_dom_sfInterPro:TPR_1InterPro:TPR_repeatEMBL:U62135UniParc:UPI00000A3AFA
UniProt:W8QNP6SEG:seg::::
Description
SPYProbable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Source:UniProtKB/Swiss-Prot;Acc:Q96301]
Coordinates
chr3:+:3631887..3638100
Molecular Weight (calculated)
101435.0 Da
IEP (calculated)
6.350
GRAVY (calculated)
-0.214
Length
914 amino acids
Sequence
(BLAST)
001: MVGLEDDTER ERSPVVENGF SNGSRSSSSS AGVLSPSRKV TQGNDTLSYA NILRARNKFA DALALYEAML EKDSKNVEAH IGKGICLQTQ NKGNLAFDCF
101: SEAIRLDPHN ACALTHCGIL HKEEGRLVEA AESYQKALMA DASYKPAAEC LAIVLTDLGT SLKLAGNTQE GIQKYYEALK IDPHYAPAYY NLGVVYSEMM
201: QYDNALSCYE KAALERPMYA EAYCNMGVIY KNRGDLEMAI TCYERCLAVS PNFEIAKNNM AIALTDLGTK VKLEGDVTQG VAYYKKALYY NWHYADAMYN
301: LGVAYGEMLK FDMAIVFYEL AFHFNPHCAE ACNNLGVLYK DRDNLDKAVE CYQMALSIKP NFAQSLNNLG VVYTVQGKMD AAASMIEKAI LANPTYAEAF
401: NNLGVLYRDA GNITMAIDAY EECLKIDPDS RNAGQNRLLA MNYINEGLDD KLFEAHRDWG WRFTRLHPQY TSWDNLKDPE RPITIGYISP DFFTHSVSYF
501: IEAPLTHHDY TKYKVVVYSA VVKADAKTYR FRDKVLKKGG VWKDIYGIDE KKIASMVRED KIDILVELTG HTANNKLGTM ACRPAPVQVT WIGYPNTTGL
601: PTVDYRITDS LADPPDTKQK QVEELVRLPD CFLCYTPSPE AGPVCPTPAL SNGFVTFGSF NNLAKITPKV LQVWARILCA VPNSRLVVKC KPFCCDSIRQ
701: RFLTTLEQLG LESKRVDLLP LILFNHDHMQ AYSLMDISLD TFPYAGTTTT CESLYMGVPC VTMAGSVHAH NVGVSLLTKV GLGHLVAKNE DEYVQLSVDL
801: ASDVTALSKL RMSLRDLMAG SPVCNGPSFA VGLESAYRNM WKKYCKGEVP SLRRMEMLQK EVHDDPLISK DLGPSRVSVT GEATPSLKAN GSAPVPSSLP
901: TQSPQLSKRM DSTS
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.