Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G11540.1 | CDY04787 | AT1G22770.1 | 15155885 |
| AT3G11540.1 | CDY21388 | AT1G22770.1 | 15155885 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001408.1-P | Field mustard | cytosol | 100.0 | 100.0 |
| CDY08515 | Canola | cytosol | 83.89 | 83.15 |
| AT3G11540.1 | Thale cress | cytosol | 84.11 | 82.82 |
| CDY00739 | Canola | cytosol | 96.33 | 81.1 |
| CDY01033 | Canola | cytosol | 80.78 | 79.54 |
| VIT_08s0007g02910.t01 | Wine grape | cytosol | 71.89 | 70.79 |
| KRH38138 | Soybean | cytosol | 14.78 | 70.37 |
| Solyc09g010180.2.1 | Tomato | extracellular | 68.22 | 65.95 |
| PGSC0003DMT400023083 | Potato | cytosol | 68.22 | 65.95 |
| GSMUA_Achr3P22610_001 | Banana | cytosol | 66.78 | 65.47 |
| Zm00001d031938_P001 | Maize | plastid | 66.22 | 65.42 |
| EES14080 | Sorghum | cytosol | 66.0 | 64.92 |
| Os08t0559300-01 | Rice | cytosol | 65.89 | 63.97 |
| TraesCS6B01G136300.1 | Wheat | cytosol, plastid | 65.56 | 62.9 |
| TraesCS6D01G095600.1 | Wheat | cytosol | 65.56 | 62.7 |
| TraesCS6A01G107700.1 | Wheat | cytosol | 65.44 | 62.53 |
| HORVU6Hr1G019280.3 | Barley | cytosol | 66.33 | 61.67 |
| CDY21133 | Canola | cytosol, mitochondrion | 22.67 | 20.92 |
| CDY29989 | Canola | cytosol | 22.67 | 20.9 |
| CDY55452 | Canola | cytosol | 2.11 | 8.56 |
| CDY46833 | Canola | cytosol, mitochondrion, nucleus, plastid | 5.33 | 5.94 |
Protein Annotations
| KEGG:00514+2.4.1.255 | Gene3D:1.25.40.10 | MapMan:18.1.2.2.1 | Gene3D:3.40.50.11380 | Gene3D:3.40.50.2000 | EnsemblPlants:CDX73870 |
| ProteinID:CDX73870 | ProteinID:CDX73870.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00111583001 |
| InterPro:IPR011990 | InterPro:IPR013026 | InterPro:IPR019734 | InterPro:OGT/SEC/SPY_C | PFAM:PF00515 | PFAM:PF13424 |
| PFAM:PF13432 | PFAM:PF13844 | PFscan:PS50005 | PFscan:PS50293 | PANTHER:PTHR44835 | SMART:SM00028 |
| SMART:SM00671 | SUPFAM:SSF48452 | InterPro:Sel1-like | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | InterPro:TPR_1 |
| InterPro:TPR_repeat | UniPathway:UPA00378 | UniParc:UPI000254071D | : | : | : |
Description
BnaA03g31770D
Coordinates
chrLK031800:-:318912..323595
Molecular Weight (calculated)
100090.0 Da
IEP (calculated)
5.765
GRAVY (calculated)
-0.215
Length
900 amino acids
Sequence
(BLAST)
(BLAST)
001: MVVLEDNTER ERSPPLVENG FANGPKAIQG NGNDNDTLSY ANVLRARNKF SDALSLYETL LERDSNNVEA HIGKGICLQT QSKVNLAFDC FGEAIRLDPH
101: NACALTHCGI LHKEEGRLVE AAESYQRALM ADASYKPAAE CLAVVLTDLG TSLKLAGSTQ EGIQKYYEAL KIDPHYAPAY YNLGVVYSEM MQYDSALGCY
201: EKAALERPMY AEAYCNMGVI YKNRGDLEMA ITCYERCLAV SPNFEIAKNN MAIALTDLGT KVKLEGDVSQ GVAYYKKALY YNWHYADAMY NLGVAYGEML
301: KFDMAIVFYE LAFHFNPHCA EACNNLGVLY KDRDNLDKAV ECYQMALSIK PNFAQSLNNL GVVYTVQGKM DAAADTIEKA ILANPTYAEA FNNLGVLYRD
401: AGNITAAIDA YEECLKIDQD SRNAGQNRLL AMNYINEGLD DKLYEAHRDW GWRFTRLHPQ YTSWDNVKDP ERPITIGYIS PDFFTHSVSY FIEAPLTHHD
501: YTKYRVVVYS AVVKADAKTF RFRDKVLKKG GVWKDIYGID EKKIASMVRD DEIDILVELT GHTANNKLGT MACRPAPVQV TWIGYPNTTG LPTVDYRITD
601: SLADPLDTKQ KQVEELVRLP DCFLCYTPSP EAGPVCPTPA LSNGFVTFGS FNNLAKITPK VLQVWARILC AVPNSRLVVK CKPFCSDSIR QRFLTTLEQL
701: GLESKRVDLL PLILFNHDHM QAYSLMDISL DTFPYAGTTT TCESLYMGVP CVTMAGSVHA HNVGVSLLSN VGLGRLVAKN EDEYVRLSVD LASDVTALSK
801: LRMSLRDLMA GSPVCNGPSF AVALESAYRS MWRSYCKGEV PSLKRMEKLQ KEVQEDPLIS SRLNVTGEAT PSLKANGSAP VPSSLPTQSW QLSKNRDSTS
101: NACALTHCGI LHKEEGRLVE AAESYQRALM ADASYKPAAE CLAVVLTDLG TSLKLAGSTQ EGIQKYYEAL KIDPHYAPAY YNLGVVYSEM MQYDSALGCY
201: EKAALERPMY AEAYCNMGVI YKNRGDLEMA ITCYERCLAV SPNFEIAKNN MAIALTDLGT KVKLEGDVSQ GVAYYKKALY YNWHYADAMY NLGVAYGEML
301: KFDMAIVFYE LAFHFNPHCA EACNNLGVLY KDRDNLDKAV ECYQMALSIK PNFAQSLNNL GVVYTVQGKM DAAADTIEKA ILANPTYAEA FNNLGVLYRD
401: AGNITAAIDA YEECLKIDQD SRNAGQNRLL AMNYINEGLD DKLYEAHRDW GWRFTRLHPQ YTSWDNVKDP ERPITIGYIS PDFFTHSVSY FIEAPLTHHD
501: YTKYRVVVYS AVVKADAKTF RFRDKVLKKG GVWKDIYGID EKKIASMVRD DEIDILVELT GHTANNKLGT MACRPAPVQV TWIGYPNTTG LPTVDYRITD
601: SLADPLDTKQ KQVEELVRLP DCFLCYTPSP EAGPVCPTPA LSNGFVTFGS FNNLAKITPK VLQVWARILC AVPNSRLVVK CKPFCSDSIR QRFLTTLEQL
701: GLESKRVDLL PLILFNHDHM QAYSLMDISL DTFPYAGTTT TCESLYMGVP CVTMAGSVHA HNVGVSLLSN VGLGRLVAKN EDEYVRLSVD LASDVTALSK
801: LRMSLRDLMA GSPVCNGPSF AVALESAYRS MWRSYCKGEV PSLKRMEKLQ KEVQEDPLIS SRLNVTGEAT PSLKANGSAP VPSSLPTQSW QLSKNRDSTS
001: MVGLEDDTER ERSPVVENGF SNGSRSSSSS AGVLSPSRKV TQGNDTLSYA NILRARNKFA DALALYEAML EKDSKNVEAH IGKGICLQTQ NKGNLAFDCF
101: SEAIRLDPHN ACALTHCGIL HKEEGRLVEA AESYQKALMA DASYKPAAEC LAIVLTDLGT SLKLAGNTQE GIQKYYEALK IDPHYAPAYY NLGVVYSEMM
201: QYDNALSCYE KAALERPMYA EAYCNMGVIY KNRGDLEMAI TCYERCLAVS PNFEIAKNNM AIALTDLGTK VKLEGDVTQG VAYYKKALYY NWHYADAMYN
301: LGVAYGEMLK FDMAIVFYEL AFHFNPHCAE ACNNLGVLYK DRDNLDKAVE CYQMALSIKP NFAQSLNNLG VVYTVQGKMD AAASMIEKAI LANPTYAEAF
401: NNLGVLYRDA GNITMAIDAY EECLKIDPDS RNAGQNRLLA MNYINEGLDD KLFEAHRDWG WRFTRLHPQY TSWDNLKDPE RPITIGYISP DFFTHSVSYF
501: IEAPLTHHDY TKYKVVVYSA VVKADAKTYR FRDKVLKKGG VWKDIYGIDE KKIASMVRED KIDILVELTG HTANNKLGTM ACRPAPVQVT WIGYPNTTGL
601: PTVDYRITDS LADPPDTKQK QVEELVRLPD CFLCYTPSPE AGPVCPTPAL SNGFVTFGSF NNLAKITPKV LQVWARILCA VPNSRLVVKC KPFCCDSIRQ
701: RFLTTLEQLG LESKRVDLLP LILFNHDHMQ AYSLMDISLD TFPYAGTTTT CESLYMGVPC VTMAGSVHAH NVGVSLLTKV GLGHLVAKNE DEYVQLSVDL
801: ASDVTALSKL RMSLRDLMAG SPVCNGPSFA VGLESAYRNM WKKYCKGEVP SLRRMEMLQK EVHDDPLISK DLGPSRVSVT GEATPSLKAN GSAPVPSSLP
901: TQSPQLSKRM DSTS
101: SEAIRLDPHN ACALTHCGIL HKEEGRLVEA AESYQKALMA DASYKPAAEC LAIVLTDLGT SLKLAGNTQE GIQKYYEALK IDPHYAPAYY NLGVVYSEMM
201: QYDNALSCYE KAALERPMYA EAYCNMGVIY KNRGDLEMAI TCYERCLAVS PNFEIAKNNM AIALTDLGTK VKLEGDVTQG VAYYKKALYY NWHYADAMYN
301: LGVAYGEMLK FDMAIVFYEL AFHFNPHCAE ACNNLGVLYK DRDNLDKAVE CYQMALSIKP NFAQSLNNLG VVYTVQGKMD AAASMIEKAI LANPTYAEAF
401: NNLGVLYRDA GNITMAIDAY EECLKIDPDS RNAGQNRLLA MNYINEGLDD KLFEAHRDWG WRFTRLHPQY TSWDNLKDPE RPITIGYISP DFFTHSVSYF
501: IEAPLTHHDY TKYKVVVYSA VVKADAKTYR FRDKVLKKGG VWKDIYGIDE KKIASMVRED KIDILVELTG HTANNKLGTM ACRPAPVQVT WIGYPNTTGL
601: PTVDYRITDS LADPPDTKQK QVEELVRLPD CFLCYTPSPE AGPVCPTPAL SNGFVTFGSF NNLAKITPKV LQVWARILCA VPNSRLVVKC KPFCCDSIRQ
701: RFLTTLEQLG LESKRVDLLP LILFNHDHMQ AYSLMDISLD TFPYAGTTTT CESLYMGVPC VTMAGSVHAH NVGVSLLTKV GLGHLVAKNE DEYVQLSVDL
801: ASDVTALSKL RMSLRDLMAG SPVCNGPSFA VGLESAYRNM WKKYCKGEVP SLRRMEMLQK EVHDDPLISK DLGPSRVSVT GEATPSLKAN GSAPVPSSLP
901: TQSPQLSKRM DSTS
Arabidopsis Description
SPYProbable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Source:UniProtKB/Swiss-Prot;Acc:Q96301]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.