Factsheet for TraesCS6B01G136300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G116300.1
TraesCS3B01G135400.1
TraesCS3D01G118200.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11540.1	TraesCS3A01G116300.1	AT1G22770.1	15155885
AT3G11540.1	TraesCS3B01G135400.1	AT1G22770.1	15155885
AT3G11540.1	TraesCS3D01G118200.2	AT1G22770.1	15155885

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G095600.1	Wheat	cytosol	97.44	97.13
TraesCS6A01G107700.1	Wheat	cytosol	91.26	90.87
HORVU6Hr1G019280.3	Barley	cytosol	86.57	83.88
EES14080	Sorghum	cytosol	80.92	82.95
Os08t0559300-01	Rice	cytosol	81.88	82.85
Zm00001d031938_P001	Maize	plastid	80.38	82.77
GSMUA_Achr3P22610_001	Banana	cytosol	73.56	75.16
VIT_08s0007g02910.t01	Wine grape	cytosol	72.71	74.62
Bra034832.1-P	Field mustard	cytosol	72.28	74.18
AT3G11540.1	Thale cress	cytosol	72.28	74.18
CDY08515	Canola	cytosol	71.75	74.12
CDY01033	Canola	cytosol	71.96	73.85
PGSC0003DMT400023083	Potato	cytosol	72.81	73.36
Solyc09g010180.2.1	Tomato	extracellular	72.6	73.15
KRH72262	Soybean	cytosol	72.28	73.06
KRH67954	Soybean	cytosol	71.54	73.01
KRH32780	Soybean	cytosol	71.64	69.78
KRH38138	Soybean	cytosol	13.97	69.31
KRG96211	Soybean	plastid	71.64	69.21
CDX73870	Canola	cytosol	62.9	65.56
Bra001408.1-P	Field mustard	cytosol	62.9	65.56
CDY00739	Canola	cytosol	70.68	62.02
TraesCS2B01G293500.1	Wheat	cytosol	23.77	22.62
TraesCS4B01G215000.1	Wheat	cytosol, mitochondrion	7.25	8.08

Protein Annotations

KEGG:00514+2.4.1.255	Gene3D:1.25.40.10	MapMan:18.1.2.2.1	Gene3D:3.40.50.11380	Gene3D:3.40.50.2000	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734
InterPro:OGT/SEC/SPY_C	PFAM:PF00515	PFAM:PF13181	PFAM:PF13374	PFAM:PF13432	PFAM:PF13844
PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR44835	SMART:SM00028	SMART:SM00671	SUPFAM:SSF48452
InterPro:Sel1-like	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_1	InterPro:TPR_repeat	EnsemblPlantsGene:TraesCS6B01G136300
EnsemblPlants:TraesCS6B01G136300.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6B:+:133691429..133698315

Molecular Weight (calculated)

103292.0 Da

IEP (calculated)

5.571

GRAVY (calculated)

-0.189

Length

938 amino acids

Sequence
(BLAST)

001: MESLQGKESN GAVPDCNGAA APPAKQQLPE GADALRYANI LRSRNKFADA LQLYTTVLDK DGTNVDALIG KGICLQAQSL PRQALDCFTE AVKVDPKNAC
101: ALTHCGMIYK DEGHLVEAAE AYQKARSADP SYKAAAEFLA IVLTDLGTSL KLAGNTEDGI QKYCEALEVD SHYAPAYYNL GVVYSEMMQF DVALTCYEKA
201: ALERPLYAEA YCNMGVIYKN RGELDAAIAC YDRCLTISPN FEIAKNNMAI ALTDLGTKVK IEGDINQGVA YYKKALFYNW HYADAMYNLG VAYGEMLNFE
301: MAIVFYELAL HFNPRCAEAC NNLGVIYKDR DNLDKAVECY QMALSIKPNF SQSLNNLGVV YTVQGKMDAA ASMIEKAILA NPTYAEAYNN LGVLYRDAGS
401: ITLSVQAYER CLQIDPDSRN AGQNRLLAMN YIDEGSDDKL YDAHREWGKR FMKLYAQYTS WDNIKIADRP LVIGYVSPDF FTHSVSYFVE APLTHHDYTN
501: CKVVVYSGVV KADAKTLRFK DKVLKKGGVW RDIYGIDEKK VATLVREDKV DILVELTGHT ANNKLGTMAC RPAPIQVTWI GYPNTTGLPA IDYRITDSLA
601: DSPNTNQKHV EELVRLPESF LCYTPSPEAG PVCPTPAISN GFVTFGSFNN LAKITPKVMQ VWARILCAVP NSRLVVKCKP FCCDSIRQKF LSTLEELGLE
701: SLRVDLLPLI HLNHDHMQAY SLMDISLDTF PYAGTTTTCE SLYMGVPCVT MAGSVHAHNV GVSLLTKVGL GRLVAKTEDE YVSLALELAS DVSALEELRK
801: SLRELMIKSP VCDGESFTRG LESAYRSMWH RYCDGDSPAL RRLEVLAGED LDKTAVKLVD LKAQRANATA EEDNQSPIKK VDAMSKGGEP QIMANDVSSP
901: EGNQALVTAK AQPQIMVNGV SSPHSPSGRC EANGHSSR

Best Arabidopsis Sequence Match ( AT3G11540.1 )
(BLAST)

001: MVGLEDDTER ERSPVVENGF SNGSRSSSSS AGVLSPSRKV TQGNDTLSYA NILRARNKFA DALALYEAML EKDSKNVEAH IGKGICLQTQ NKGNLAFDCF
101: SEAIRLDPHN ACALTHCGIL HKEEGRLVEA AESYQKALMA DASYKPAAEC LAIVLTDLGT SLKLAGNTQE GIQKYYEALK IDPHYAPAYY NLGVVYSEMM
201: QYDNALSCYE KAALERPMYA EAYCNMGVIY KNRGDLEMAI TCYERCLAVS PNFEIAKNNM AIALTDLGTK VKLEGDVTQG VAYYKKALYY NWHYADAMYN
301: LGVAYGEMLK FDMAIVFYEL AFHFNPHCAE ACNNLGVLYK DRDNLDKAVE CYQMALSIKP NFAQSLNNLG VVYTVQGKMD AAASMIEKAI LANPTYAEAF
401: NNLGVLYRDA GNITMAIDAY EECLKIDPDS RNAGQNRLLA MNYINEGLDD KLFEAHRDWG WRFTRLHPQY TSWDNLKDPE RPITIGYISP DFFTHSVSYF
501: IEAPLTHHDY TKYKVVVYSA VVKADAKTYR FRDKVLKKGG VWKDIYGIDE KKIASMVRED KIDILVELTG HTANNKLGTM ACRPAPVQVT WIGYPNTTGL
601: PTVDYRITDS LADPPDTKQK QVEELVRLPD CFLCYTPSPE AGPVCPTPAL SNGFVTFGSF NNLAKITPKV LQVWARILCA VPNSRLVVKC KPFCCDSIRQ
701: RFLTTLEQLG LESKRVDLLP LILFNHDHMQ AYSLMDISLD TFPYAGTTTT CESLYMGVPC VTMAGSVHAH NVGVSLLTKV GLGHLVAKNE DEYVQLSVDL
801: ASDVTALSKL RMSLRDLMAG SPVCNGPSFA VGLESAYRNM WKKYCKGEVP SLRRMEMLQK EVHDDPLISK DLGPSRVSVT GEATPSLKAN GSAPVPSSLP
901: TQSPQLSKRM DSTS

Arabidopsis Description

SPYProbable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Source:UniProtKB/Swiss-Prot;Acc:Q96301]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.