Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
29876421
|
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc04g071990.2.1 | |
| Solyc12g056650.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G11540.1 | Solyc04g071990.2.1 | AT1G22770.1 | 15155885 |
| AT3G11540.1 | Solyc12g056650.1.1 | AT1G22770.1 | 15155885 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400023083 | Potato | cytosol | 98.17 | 98.17 |
| VIT_08s0007g02910.t01 | Wine grape | cytosol | 82.38 | 83.92 |
| KRH72262 | Soybean | cytosol | 80.88 | 81.14 |
| KRH67954 | Soybean | cytosol | 78.2 | 79.22 |
| AT3G11540.1 | Thale cress | cytosol | 76.8 | 78.23 |
| CDY08515 | Canola | cytosol | 75.94 | 77.86 |
| KRH32780 | Soybean | cytosol | 80.13 | 77.47 |
| Bra034832.1-P | Field mustard | cytosol | 75.4 | 76.81 |
| CDY01033 | Canola | cytosol | 75.4 | 76.81 |
| GSMUA_Achr3P22610_001 | Banana | cytosol | 74.76 | 75.82 |
| EES14080 | Sorghum | cytosol | 74.01 | 75.3 |
| KRG96211 | Soybean | plastid | 78.09 | 74.87 |
| Zm00001d031938_P001 | Maize | plastid | 73.25 | 74.86 |
| Os08t0559300-01 | Rice | cytosol | 73.58 | 73.89 |
| TraesCS6B01G136300.1 | Wheat | cytosol, plastid | 73.15 | 72.6 |
| TraesCS6D01G095600.1 | Wheat | cytosol | 73.36 | 72.58 |
| TraesCS6A01G107700.1 | Wheat | cytosol | 72.72 | 71.87 |
| HORVU6Hr1G019280.3 | Barley | cytosol | 72.82 | 70.04 |
| CDX73870 | Canola | cytosol | 65.95 | 68.22 |
| Bra001408.1-P | Field mustard | cytosol | 65.95 | 68.22 |
| CDY00739 | Canola | cytosol | 74.44 | 64.83 |
| Solyc09g097830.2.1 | Tomato | cytosol | 24.06 | 22.74 |
| Solyc04g081050.1.1 | Tomato | cytosol | 7.52 | 8.73 |
Protein Annotations
| KEGG:00514+2.4.1.255 | Gene3D:1.25.40.10 | MapMan:18.1.2.2.1 | Gene3D:3.40.50.11380 | Gene3D:3.40.50.2000 | EMBL:AJ312094 |
| ProteinID:CAC85168.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005975 |
| GO:GO:0006464 | GO:GO:0006486 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009736 | GO:GO:0009740 | GO:GO:0009938 | GO:GO:0009987 |
| GO:GO:0016740 | GO:GO:0016757 | GO:GO:0019538 | GO:GO:2000377 | InterPro:IPR011990 | InterPro:IPR013026 |
| InterPro:IPR019734 | InterPro:OGT/SEC/SPY_C | PFAM:PF00515 | PFAM:PF13181 | PFAM:PF13374 | PFAM:PF13844 |
| PFscan:PS50005 | PFscan:PS50293 | PANTHER:PTHR44835 | UniProt:Q8RVB2 | SMART:SM00028 | SMART:SM00671 |
| SUPFAM:SSF48452 | InterPro:Sel1-like | EnsemblPlantsGene:Solyc09g010180.2 | EnsemblPlants:Solyc09g010180.2.1 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf |
| InterPro:TPR_1 | InterPro:TPR_repeat | UniParc:UPI000009C756 | SEG:seg | : | : |
Description
SPYProbable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Source:UniProtKB/Swiss-Prot;Acc:Q8RVB2]
Coordinates
chr9:+:3556738..3572844
Molecular Weight (calculated)
103497.0 Da
IEP (calculated)
6.135
GRAVY (calculated)
-0.268
Length
931 amino acids
Sequence
(BLAST)
(BLAST)
001: MAWTEKDVEN GKESESLGNN GFLKGGQSSS GSKGSPGRIS HVKKIFEDKD AITYANILRS RNKFVDALAI YESVLEKDSK SIESLIGKGI CLQMQNTGRL
101: AFESFSEAIK VDPQNACALT HCGILYKDEG RLVEAAESYE KALKADPSYT PAAECLAIVL TDIGTSLKLA GNTQEGIQKY YEAIKIDSHY APAYYNLGVV
201: YSEMMQYDMA LNCYEKAALE RPMYAEAYCN MGVIFKNRGD LESAIACYER CLAVSPNFEI AKNNMAIALT DLGTKVKLEG DINQGVAYYK KALCYNWHYA
301: DAMYNLGVAY GEMLKFDMAI VFYELAFHFN PHCAEACNNL GVIYKDRDNL DKAVECYQLA LSIKPNFSQS LNNLGVVYTV QGKMDAAASM IEKAIIANPT
401: YAEAYNNLGV LYRDAGNISL AIEAYEQCLK IDPDSRNAGQ NRLLAMNYIN EGTDDKLYEA HRDWGRRFMK LYPQYTSWDN SKVPERPLVI GYVSPDYFTH
501: SVSYFIEAPL AHHDYTNYKV VVYSSVVKAD AKTNRFRDKV MKKGGLWRDI YGIDEKKVSS MIREDKVDIM VELTGHTANN KLGTMACRPA PVQVTWIGYP
601: NTTGLPTIDY RITDAMADPP NAKQKHVEEL VRLPNSFLCY TPSPEAGPVC PAPALSNGFV TFGSFNNLAK ITPKVLKVWA RILSAVPHSR LIVKCKPFCC
701: DSVRQRFLSI LEQLGLEPQR VDLLPLILLN HDHMQAYSLM DISLDTFPYA GTTTTCESLY MGVPCVTMGG SVHAHNVGVS LLKTVGLENL VARNEDEYVE
801: SAIQLASDVT SLSNLRMSLR ELMSKSPLCD GAKFTRNIES IYRSMWRRYC DGDVPSLRRM ELLQQQQTQT ESVVPEESSV NPSERTITSA PTDGSIKENG
901: FTAVPALALK SSTSEENGVQ SNHNGNHGNL S
101: AFESFSEAIK VDPQNACALT HCGILYKDEG RLVEAAESYE KALKADPSYT PAAECLAIVL TDIGTSLKLA GNTQEGIQKY YEAIKIDSHY APAYYNLGVV
201: YSEMMQYDMA LNCYEKAALE RPMYAEAYCN MGVIFKNRGD LESAIACYER CLAVSPNFEI AKNNMAIALT DLGTKVKLEG DINQGVAYYK KALCYNWHYA
301: DAMYNLGVAY GEMLKFDMAI VFYELAFHFN PHCAEACNNL GVIYKDRDNL DKAVECYQLA LSIKPNFSQS LNNLGVVYTV QGKMDAAASM IEKAIIANPT
401: YAEAYNNLGV LYRDAGNISL AIEAYEQCLK IDPDSRNAGQ NRLLAMNYIN EGTDDKLYEA HRDWGRRFMK LYPQYTSWDN SKVPERPLVI GYVSPDYFTH
501: SVSYFIEAPL AHHDYTNYKV VVYSSVVKAD AKTNRFRDKV MKKGGLWRDI YGIDEKKVSS MIREDKVDIM VELTGHTANN KLGTMACRPA PVQVTWIGYP
601: NTTGLPTIDY RITDAMADPP NAKQKHVEEL VRLPNSFLCY TPSPEAGPVC PAPALSNGFV TFGSFNNLAK ITPKVLKVWA RILSAVPHSR LIVKCKPFCC
701: DSVRQRFLSI LEQLGLEPQR VDLLPLILLN HDHMQAYSLM DISLDTFPYA GTTTTCESLY MGVPCVTMGG SVHAHNVGVS LLKTVGLENL VARNEDEYVE
801: SAIQLASDVT SLSNLRMSLR ELMSKSPLCD GAKFTRNIES IYRSMWRRYC DGDVPSLRRM ELLQQQQTQT ESVVPEESSV NPSERTITSA PTDGSIKENG
901: FTAVPALALK SSTSEENGVQ SNHNGNHGNL S
001: MVGLEDDTER ERSPVVENGF SNGSRSSSSS AGVLSPSRKV TQGNDTLSYA NILRARNKFA DALALYEAML EKDSKNVEAH IGKGICLQTQ NKGNLAFDCF
101: SEAIRLDPHN ACALTHCGIL HKEEGRLVEA AESYQKALMA DASYKPAAEC LAIVLTDLGT SLKLAGNTQE GIQKYYEALK IDPHYAPAYY NLGVVYSEMM
201: QYDNALSCYE KAALERPMYA EAYCNMGVIY KNRGDLEMAI TCYERCLAVS PNFEIAKNNM AIALTDLGTK VKLEGDVTQG VAYYKKALYY NWHYADAMYN
301: LGVAYGEMLK FDMAIVFYEL AFHFNPHCAE ACNNLGVLYK DRDNLDKAVE CYQMALSIKP NFAQSLNNLG VVYTVQGKMD AAASMIEKAI LANPTYAEAF
401: NNLGVLYRDA GNITMAIDAY EECLKIDPDS RNAGQNRLLA MNYINEGLDD KLFEAHRDWG WRFTRLHPQY TSWDNLKDPE RPITIGYISP DFFTHSVSYF
501: IEAPLTHHDY TKYKVVVYSA VVKADAKTYR FRDKVLKKGG VWKDIYGIDE KKIASMVRED KIDILVELTG HTANNKLGTM ACRPAPVQVT WIGYPNTTGL
601: PTVDYRITDS LADPPDTKQK QVEELVRLPD CFLCYTPSPE AGPVCPTPAL SNGFVTFGSF NNLAKITPKV LQVWARILCA VPNSRLVVKC KPFCCDSIRQ
701: RFLTTLEQLG LESKRVDLLP LILFNHDHMQ AYSLMDISLD TFPYAGTTTT CESLYMGVPC VTMAGSVHAH NVGVSLLTKV GLGHLVAKNE DEYVQLSVDL
801: ASDVTALSKL RMSLRDLMAG SPVCNGPSFA VGLESAYRNM WKKYCKGEVP SLRRMEMLQK EVHDDPLISK DLGPSRVSVT GEATPSLKAN GSAPVPSSLP
901: TQSPQLSKRM DSTS
101: SEAIRLDPHN ACALTHCGIL HKEEGRLVEA AESYQKALMA DASYKPAAEC LAIVLTDLGT SLKLAGNTQE GIQKYYEALK IDPHYAPAYY NLGVVYSEMM
201: QYDNALSCYE KAALERPMYA EAYCNMGVIY KNRGDLEMAI TCYERCLAVS PNFEIAKNNM AIALTDLGTK VKLEGDVTQG VAYYKKALYY NWHYADAMYN
301: LGVAYGEMLK FDMAIVFYEL AFHFNPHCAE ACNNLGVLYK DRDNLDKAVE CYQMALSIKP NFAQSLNNLG VVYTVQGKMD AAASMIEKAI LANPTYAEAF
401: NNLGVLYRDA GNITMAIDAY EECLKIDPDS RNAGQNRLLA MNYINEGLDD KLFEAHRDWG WRFTRLHPQY TSWDNLKDPE RPITIGYISP DFFTHSVSYF
501: IEAPLTHHDY TKYKVVVYSA VVKADAKTYR FRDKVLKKGG VWKDIYGIDE KKIASMVRED KIDILVELTG HTANNKLGTM ACRPAPVQVT WIGYPNTTGL
601: PTVDYRITDS LADPPDTKQK QVEELVRLPD CFLCYTPSPE AGPVCPTPAL SNGFVTFGSF NNLAKITPKV LQVWARILCA VPNSRLVVKC KPFCCDSIRQ
701: RFLTTLEQLG LESKRVDLLP LILFNHDHMQ AYSLMDISLD TFPYAGTTTT CESLYMGVPC VTMAGSVHAH NVGVSLLTKV GLGHLVAKNE DEYVQLSVDL
801: ASDVTALSKL RMSLRDLMAG SPVCNGPSFA VGLESAYRNM WKKYCKGEVP SLRRMEMLQK EVHDDPLISK DLGPSRVSVT GEATPSLKAN GSAPVPSSLP
901: TQSPQLSKRM DSTS
Arabidopsis Description
SPYProbable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Source:UniProtKB/Swiss-Prot;Acc:Q96301]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.