Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc01g005300.2.1 | |
| Solyc03g115940.2.1 | |
| Solyc06g069760.2.1 | |
| Solyc09g010180.2.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g056650.1.1 | Tomato | nucleus | 80.21 | 80.21 |
| VIT_18s0157g00020.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 78.83 | 78.63 |
| KRH35085 | Soybean | cytosol, nucleus, plasma membrane | 76.01 | 75.36 |
| KRG91704 | Soybean | cytosol | 76.01 | 75.3 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome | 39.33 | 73.91 |
| KRH08640 | Soybean | cytosol | 68.12 | 72.67 |
| AT1G22770.1 | Thale cress | cytosol | 71.72 | 71.36 |
| Bra024536.1-P | Field mustard | cytosol, nucleus, plasma membrane | 70.52 | 70.28 |
| CDY21388 | Canola | cytosol, nucleus, plasma membrane | 70.44 | 70.2 |
| CDY04787 | Canola | cytosol, nucleus, plasma membrane | 70.35 | 70.17 |
| Os01t0182600-03 | Rice | nucleus | 68.98 | 69.4 |
| GSMUA_Achr7P09770_001 | Banana | cytosol | 67.52 | 69.37 |
| TraesCS3B01G135400.1 | Wheat | cytosol, nucleus, plasma membrane | 68.21 | 68.92 |
| TraesCS3D01G118200.2 | Wheat | nucleus | 68.04 | 68.86 |
| TraesCS3A01G116300.1 | Wheat | cytosol, nucleus, plasma membrane | 68.12 | 68.83 |
| KXG31676 | Sorghum | nucleus | 68.12 | 68.42 |
| GSMUA_Achr10P... | Banana | cytosol | 68.29 | 68.06 |
| Zm00001d008826_P078 | Maize | nucleus | 68.29 | 67.43 |
| Zm00001d039589_P136 | Maize | plasma membrane | 67.61 | 66.92 |
| HORVU3Hr1G021150.2 | Barley | cytosol | 14.05 | 65.6 |
| HORVU3Hr1G021140.2 | Barley | plastid | 54.5 | 65.1 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion, nucleus, plastid | 22.02 | 64.25 |
Protein Annotations
| EnsemblPlants:Solyc04g071990.2.1 | EnsemblPlantsGene:Solyc04g071990.2 | GO:GO:0000003 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009628 |
| GO:GO:0009791 | GO:GO:2000028 | InterPro:GIGANTEA | PANTHER:PTHR36319 | PRINTS:PR02081 | SEG:seg |
| UniParc:UPI0002766C0A | UniProt:K4BTI6 | MapMan:26.1.2.3.2 | : | : | : |
Description
No Description!
Coordinates
chr4:-:59013179..59055098
Molecular Weight (calculated)
127934.0 Da
IEP (calculated)
7.001
GRAVY (calculated)
0.014
Length
1167 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAATCERWID GLQYSSIFWP PPQDAQQRKA QITAYVEYFV QFTSEQFPED IAELIRNRYP SKENRLFDDV LATFVLHHPE HGHTVILPII SCIIDGTLDY
0101: DKSCPPFASF ISLVCPSSEK EYSEQWALAC GEILRILTHY NRPIYKVVQQ GGEADRSSQG IDASTSKSAD SGPSMPSVHH ERKTLRPLSP WITDILLTAP
0201: LGIRSDYFRW CGGVMGKYAA GELKPPSTAS SRGSGKHPQL IPSTPRWAVA NGAGVILSVC DEEVARYETA TLTAAAVPAL LLPPPTTPMD EHLVAGLPAL
0301: EPYARLFHRY YAIATPSATQ RLLLGLLEAP PSWAPDALDA AVQLVELLRA AEDYATNLRL PRNWMHLHFL RAIGIAMSMR AGIAADAAAA LLFRVLSQPA
0401: LLFPPLRQVE GIEVQHEPLG GYISCNKKQR QVPLAEATVE ATAQGIASML CAHGPEVEWR ICTIWEAAYG LIPLTSSAVD LPEIIVATPL LPPILSWNLY
0501: MPLLKVLEYL PRGSPSETCL MKIFVATVEA ILQRTFPSES SREEIRRNRY NMFGPASKNL AVAELRTMVH SLFLESCASV ELASRLLFVV LTVCVTHEAK
0601: TNGSRRPVGK DPHHVSAMGS ESLEVGGKQK EKIPKKLKKQ GPVSAFDSYV LAAVCALSCE LQLFPLLSRG SNYSDPKSIL VAAKHANDSS MELKNGIHSA
0701: VCHTRRILTI LEALFSLKPS SIGTSWSYSS NEIVAAAMVA AHISDLFRHS KACMHALSVL IRCKWDNEIL SRASSLYNLI DIHSKVVASI VDKAEPLEAH
0801: LIPVPVLKKR SSGLNGKKHN KYSNCTCLTA EQSSLLECKH STDCKTLTMS EKVLHSSEAA QCTSGKGIAS FPLDASDLAN FLTMDRLIGF NCNAEDLIKS
0901: VLTENEELCF SVVSLLWHKL IASPEIQPSA ESTSAQQGWR QVIDALCNVV SALPAKAATA IVLQADKELQ PWIAKDDDLG QKMWRINQRI VKLIAEVMRN
1001: HDTPESLVIL ASAPDLLLRA TDGMLVDGEA CTLPQLELLE VTARAVQPVL EWGESGSVIV DGLSNLLKCR LPATVRCISH PSALVRALSI SLLRAIMQTG
1101: SIKTRANRAD VNGIHGPAYK YLNIGTINWQ RDIEKCLTWE ANSRIENGMC TQFLDMAAKE LGCTISI
0101: DKSCPPFASF ISLVCPSSEK EYSEQWALAC GEILRILTHY NRPIYKVVQQ GGEADRSSQG IDASTSKSAD SGPSMPSVHH ERKTLRPLSP WITDILLTAP
0201: LGIRSDYFRW CGGVMGKYAA GELKPPSTAS SRGSGKHPQL IPSTPRWAVA NGAGVILSVC DEEVARYETA TLTAAAVPAL LLPPPTTPMD EHLVAGLPAL
0301: EPYARLFHRY YAIATPSATQ RLLLGLLEAP PSWAPDALDA AVQLVELLRA AEDYATNLRL PRNWMHLHFL RAIGIAMSMR AGIAADAAAA LLFRVLSQPA
0401: LLFPPLRQVE GIEVQHEPLG GYISCNKKQR QVPLAEATVE ATAQGIASML CAHGPEVEWR ICTIWEAAYG LIPLTSSAVD LPEIIVATPL LPPILSWNLY
0501: MPLLKVLEYL PRGSPSETCL MKIFVATVEA ILQRTFPSES SREEIRRNRY NMFGPASKNL AVAELRTMVH SLFLESCASV ELASRLLFVV LTVCVTHEAK
0601: TNGSRRPVGK DPHHVSAMGS ESLEVGGKQK EKIPKKLKKQ GPVSAFDSYV LAAVCALSCE LQLFPLLSRG SNYSDPKSIL VAAKHANDSS MELKNGIHSA
0701: VCHTRRILTI LEALFSLKPS SIGTSWSYSS NEIVAAAMVA AHISDLFRHS KACMHALSVL IRCKWDNEIL SRASSLYNLI DIHSKVVASI VDKAEPLEAH
0801: LIPVPVLKKR SSGLNGKKHN KYSNCTCLTA EQSSLLECKH STDCKTLTMS EKVLHSSEAA QCTSGKGIAS FPLDASDLAN FLTMDRLIGF NCNAEDLIKS
0901: VLTENEELCF SVVSLLWHKL IASPEIQPSA ESTSAQQGWR QVIDALCNVV SALPAKAATA IVLQADKELQ PWIAKDDDLG QKMWRINQRI VKLIAEVMRN
1001: HDTPESLVIL ASAPDLLLRA TDGMLVDGEA CTLPQLELLE VTARAVQPVL EWGESGSVIV DGLSNLLKCR LPATVRCISH PSALVRALSI SLLRAIMQTG
1101: SIKTRANRAD VNGIHGPAYK YLNIGTINWQ RDIEKCLTWE ANSRIENGMC TQFLDMAAKE LGCTISI
0001: MASSSSSERW IDGLQFSSLL WPPPRDPQQH KDQVVAYVEY FGQFTSEQFP DDIAELVRHQ YPSTEKRLLD DVLAMFVLHH PEHGHAVILP IISCLIDGSL
0101: VYSKEAHPFA SFISLVCPSS ENDYSEQWAL ACGEILRILT HYNRPIYKTE QQNGDTERNC LSKATTSGSP TSEPKAGSPT QHERKPLRPL SPWISDILLA
0201: APLGIRSDYF RWCSGVMGKY AAGELKPPTI ASRGSGKHPQ LMPSTPRWAV ANGAGVILSV CDDEVARYET ATLTAVAVPA LLLPPPTTSL DEHLVAGLPA
0301: LEPYARLFHR YYAIATPSAT QRLLLGLLEA PPSWAPDALD AAVQLVELLR AAEDYASGVR LPRNWMHLHF LRAIGIAMSM RAGVAADAAA ALLFRILSQP
0401: ALLFPPLSQV EGVEIQHAPI GGYSSNYRKQ IEVPAAEATI EATAQGIASM LCAHGPEVEW RICTIWEAAY GLIPLNSSAV DLPEIIVATP LQPPILSWNL
0501: YIPLLKVLEY LPRGSPSEAC LMKIFVATVE TILSRTFPPE SSRELTRKAR SSFTTRSATK NLAMSELRAM VHALFLESCA GVELASRLLF VVLTVCVSHE
0601: AQSSGSKRPR SEYASTTENI EANQPVSNNQ TANRKSRNVK GQGPVAAFDS YVLAAVCALA CEVQLYPMIS GGGNFSNSAV AGTITKPVKI NGSSKEYGAG
0701: IDSAISHTRR ILAILEALFS LKPSSVGTPW SYSSSEIVAA AMVAAHISEL FRRSKALTHA LSGLMRCKWD KEIHKRASSL YNLIDVHSKV VASIVDKAEP
0801: LEAYLKNTPV QKDSVTCLNW KQENTCASTT CFDTAVTSAS RTEMNPRGNH KYARHSDEGS GRPSEKGIKD FLLDASDLAN FLTADRLAGF YCGTQKLLRS
0901: VLAEKPELSF SVVSLLWHKL IAAPEIQPTA ESTSAQQGWR QVVDALCNVV SATPAKAAAA VVLQAERELQ PWIAKDDEEG QKMWKINQRI VKVLVELMRN
1001: HDRPESLVIL ASASDLLLRA TDGMLVDGEA CTLPQLELLE ATARAIQPVL AWGPSGLAVV DGLSNLLKCR LPATIRCLSH PSAHVRALST SVLRDIMNQS
1101: SIPIKVTPKL PTTEKNGMNS PSYRFFNAAS IDWKADIQNC LNWEAHSLLS TTMPTQFLDT AARELGCTIS LSQ
0101: VYSKEAHPFA SFISLVCPSS ENDYSEQWAL ACGEILRILT HYNRPIYKTE QQNGDTERNC LSKATTSGSP TSEPKAGSPT QHERKPLRPL SPWISDILLA
0201: APLGIRSDYF RWCSGVMGKY AAGELKPPTI ASRGSGKHPQ LMPSTPRWAV ANGAGVILSV CDDEVARYET ATLTAVAVPA LLLPPPTTSL DEHLVAGLPA
0301: LEPYARLFHR YYAIATPSAT QRLLLGLLEA PPSWAPDALD AAVQLVELLR AAEDYASGVR LPRNWMHLHF LRAIGIAMSM RAGVAADAAA ALLFRILSQP
0401: ALLFPPLSQV EGVEIQHAPI GGYSSNYRKQ IEVPAAEATI EATAQGIASM LCAHGPEVEW RICTIWEAAY GLIPLNSSAV DLPEIIVATP LQPPILSWNL
0501: YIPLLKVLEY LPRGSPSEAC LMKIFVATVE TILSRTFPPE SSRELTRKAR SSFTTRSATK NLAMSELRAM VHALFLESCA GVELASRLLF VVLTVCVSHE
0601: AQSSGSKRPR SEYASTTENI EANQPVSNNQ TANRKSRNVK GQGPVAAFDS YVLAAVCALA CEVQLYPMIS GGGNFSNSAV AGTITKPVKI NGSSKEYGAG
0701: IDSAISHTRR ILAILEALFS LKPSSVGTPW SYSSSEIVAA AMVAAHISEL FRRSKALTHA LSGLMRCKWD KEIHKRASSL YNLIDVHSKV VASIVDKAEP
0801: LEAYLKNTPV QKDSVTCLNW KQENTCASTT CFDTAVTSAS RTEMNPRGNH KYARHSDEGS GRPSEKGIKD FLLDASDLAN FLTADRLAGF YCGTQKLLRS
0901: VLAEKPELSF SVVSLLWHKL IAAPEIQPTA ESTSAQQGWR QVVDALCNVV SATPAKAAAA VVLQAERELQ PWIAKDDEEG QKMWKINQRI VKVLVELMRN
1001: HDRPESLVIL ASASDLLLRA TDGMLVDGEA CTLPQLELLE ATARAIQPVL AWGPSGLAVV DGLSNLLKCR LPATIRCLSH PSAHVRALST SVLRDIMNQS
1101: SIPIKVTPKL PTTEKNGMNS PSYRFFNAAS IDWKADIQNC LNWEAHSLLS TTMPTQFLDT AARELGCTIS LSQ
Arabidopsis Description
GIProtein GIGANTEA [Source:UniProtKB/Swiss-Prot;Acc:Q9SQI2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.