Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G22770.1 | OQU83614 | AT1G68050.1 | 17704763 |
| AT1G22770.1 | OQU83614 | AT1G68050.1 | 17872410 |
| AT1G22770.1 | EES14080 | AT3G11540.1 | 15155885 |
| AT1G22770.1 | EER95426 | AT5G62430.1 | 17872410 |
| AT1G22770.1 | OQU90492 | AT5G62430.1 | 17872410 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d039589_P136 | Maize | plasma membrane | 96.04 | 94.66 |
| Os01t0182600-03 | Rice | nucleus | 91.57 | 91.72 |
| TraesCS3B01G135400.1 | Wheat | cytosol, nucleus, plasma membrane | 87.78 | 88.31 |
| TraesCS3D01G118200.2 | Wheat | nucleus | 87.61 | 88.29 |
| TraesCS3A01G116300.1 | Wheat | cytosol, nucleus, plasma membrane | 87.69 | 88.23 |
| HORVU3Hr1G021150.2 | Barley | cytosol | 18.76 | 87.2 |
| HORVU3Hr1G021140.2 | Barley | plastid | 68.59 | 81.58 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome | 42.86 | 80.19 |
| GSMUA_Achr7P09770_001 | Banana | cytosol | 75.22 | 76.94 |
| GSMUA_Achr10P... | Banana | cytosol | 75.73 | 75.15 |
| VIT_18s0157g00020.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 73.06 | 72.56 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion, nucleus, plastid | 24.1 | 70.0 |
| KRH35085 | Soybean | cytosol, nucleus, plasma membrane | 69.62 | 68.73 |
| KRG91704 | Soybean | cytosol | 69.36 | 68.42 |
| Solyc04g071990.2.1 | Tomato | cytosol | 68.42 | 68.12 |
| Solyc12g056650.1.1 | Tomato | nucleus | 67.9 | 67.61 |
| KRH08640 | Soybean | cytosol | 63.43 | 67.37 |
| Bra024536.1-P | Field mustard | cytosol, nucleus, plasma membrane | 67.81 | 67.29 |
| CDY04787 | Canola | cytosol, nucleus, plasma membrane | 67.64 | 67.18 |
| CDY21388 | Canola | cytosol, nucleus, plasma membrane | 67.64 | 67.12 |
| AT1G22770.1 | Thale cress | cytosol | 67.73 | 67.09 |
| PGSC0003DMT400048370 | Potato | nucleus, plasma membrane, plastid | 50.09 | 65.91 |
| PGSC0003DMT400002842 | Potato | plastid | 3.44 | 35.71 |
Protein Annotations
| MapMan:26.1.2.3.2 | UniProt:A0A1B6Q168 | InterPro:GIGANTEA | GO:GO:0000003 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006950 |
| GO:GO:0007275 | GO:GO:0007623 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009409 |
| GO:GO:0009628 | GO:GO:0009637 | GO:GO:0009791 | GO:GO:0009987 | GO:GO:0010218 | GO:GO:0010378 |
| GO:GO:0042542 | GO:GO:0042752 | GO:GO:0048578 | GO:GO:0080167 | GO:GO:2000028 | EnsemblPlants:KXG31676 |
| ProteinID:KXG31676 | ProteinID:KXG31676.1 | ProteinID:OQU86188.1 | PRINTS:PR02081 | PANTHER:PTHR36319 | EnsemblPlantsGene:SORBI_3003G040900 |
| UniParc:UPI0001C80BAB | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr3:+:3821973..3830666
Molecular Weight (calculated)
127078.0 Da
IEP (calculated)
6.863
GRAVY (calculated)
-0.126
Length
1162 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSDSNVKWID GLQFTSLYWP PPQDVEQKQA QILAYVEYFG QFTADSEQFP EDVAQLIQSS YPSKESRLVD EVLATFVLHH PEHGHAVVHP ILSRIIDGTL
0101: CYDRHGPPFS SFISLFSHTS EQEYSEQWAL ACGEILRVLT HYNRPIFKVE RQHSEAECSS TSDQATSSDS TDKKSNNSPG NESDRKPLRP LTPWITDILL
0201: AAPLGIRSDY FRWCGGVMGK YAAGGELKPP TTACSRGSGK HPQLMPSTPR WAVANGAGVI LSVCDEEVAR YETANLTAAA VPALLLPPPT TPLDEHLVAG
0301: LPPLEPYARL FHRYYAIATP SATQRLLFGL LEAPPSWAPD ALDAAVQLVE LLRAAEDYAS GMRLPKNWMH LHFLRAIGTA MSMRAGIAAD TAAALLFRIL
0401: SQPTLLFPPL RHAEGVEVHH EPLGGYVSSY KKQLEVPASE ATIDATAQGI ASLLCAHGPD VEWRICTIWE AAYGLLPLSS SAVDLPEIVV AAPLQPPTLS
0501: WSLYLPLLKV FEYLPRGSPS EACLMRIFVA TVEAILRRAF PSETSEQSRK PRSQSKNLAV AELHTMIHSL FVESCASMDL ASRLLFVVLT VCVSHQALPG
0601: GSKRPTGSDN HSHEEATEHS RLTNGRSRCK KRQGPVATFD SYVLAAVVAL SCELDLFPCI SKNGSHSNLK DSLKIIIPGK NNGINNEPRS SISSAILHTR
0701: RILGILEALF SLKPSSVGTS WSYSSNEIVA AAMVAAHVSE LFRRSRPCLT SLSAMMRCKR DAEISTRASS LYHLIDLHGK TVSSIVNKAE PLEAHLTLTP
0801: VKKDNQHRCE ENNTSSSDSV KLENKNGSTS HKKNGFSRPL LKCAEEVLLN GDVASTSGKS IASLQVEASD LANFLTMDRN GGYRGSQTLL RSVLSEKQEL
0901: CFSVVSLLWQ KLIASPEMQM SAESTSAHQG WRKVVDALCD VVSASPTKAS TAIVLQADKD LQPWIARDDE QGQKMWRVNQ RIVKLIAELM RNHDSPEALV
1001: ILASASDLLL RATDGMLVDG EACTLPQLEL LEVTARAVHL IIEWGDSGLS VADGLCNLLK CRLSTTIRCL SHPSAHVRAL SMSVLRDILN NGSMNPSKII
1101: QGEQQRNGIQ NPSYRCLAAG IINWQADVER CIEWEAHSRR ATGLTLAFLS AAAKELGCPL PC
0101: CYDRHGPPFS SFISLFSHTS EQEYSEQWAL ACGEILRVLT HYNRPIFKVE RQHSEAECSS TSDQATSSDS TDKKSNNSPG NESDRKPLRP LTPWITDILL
0201: AAPLGIRSDY FRWCGGVMGK YAAGGELKPP TTACSRGSGK HPQLMPSTPR WAVANGAGVI LSVCDEEVAR YETANLTAAA VPALLLPPPT TPLDEHLVAG
0301: LPPLEPYARL FHRYYAIATP SATQRLLFGL LEAPPSWAPD ALDAAVQLVE LLRAAEDYAS GMRLPKNWMH LHFLRAIGTA MSMRAGIAAD TAAALLFRIL
0401: SQPTLLFPPL RHAEGVEVHH EPLGGYVSSY KKQLEVPASE ATIDATAQGI ASLLCAHGPD VEWRICTIWE AAYGLLPLSS SAVDLPEIVV AAPLQPPTLS
0501: WSLYLPLLKV FEYLPRGSPS EACLMRIFVA TVEAILRRAF PSETSEQSRK PRSQSKNLAV AELHTMIHSL FVESCASMDL ASRLLFVVLT VCVSHQALPG
0601: GSKRPTGSDN HSHEEATEHS RLTNGRSRCK KRQGPVATFD SYVLAAVVAL SCELDLFPCI SKNGSHSNLK DSLKIIIPGK NNGINNEPRS SISSAILHTR
0701: RILGILEALF SLKPSSVGTS WSYSSNEIVA AAMVAAHVSE LFRRSRPCLT SLSAMMRCKR DAEISTRASS LYHLIDLHGK TVSSIVNKAE PLEAHLTLTP
0801: VKKDNQHRCE ENNTSSSDSV KLENKNGSTS HKKNGFSRPL LKCAEEVLLN GDVASTSGKS IASLQVEASD LANFLTMDRN GGYRGSQTLL RSVLSEKQEL
0901: CFSVVSLLWQ KLIASPEMQM SAESTSAHQG WRKVVDALCD VVSASPTKAS TAIVLQADKD LQPWIARDDE QGQKMWRVNQ RIVKLIAELM RNHDSPEALV
1001: ILASASDLLL RATDGMLVDG EACTLPQLEL LEVTARAVHL IIEWGDSGLS VADGLCNLLK CRLSTTIRCL SHPSAHVRAL SMSVLRDILN NGSMNPSKII
1101: QGEQQRNGIQ NPSYRCLAAG IINWQADVER CIEWEAHSRR ATGLTLAFLS AAAKELGCPL PC
0001: MASSSSSERW IDGLQFSSLL WPPPRDPQQH KDQVVAYVEY FGQFTSEQFP DDIAELVRHQ YPSTEKRLLD DVLAMFVLHH PEHGHAVILP IISCLIDGSL
0101: VYSKEAHPFA SFISLVCPSS ENDYSEQWAL ACGEILRILT HYNRPIYKTE QQNGDTERNC LSKATTSGSP TSEPKAGSPT QHERKPLRPL SPWISDILLA
0201: APLGIRSDYF RWCSGVMGKY AAGELKPPTI ASRGSGKHPQ LMPSTPRWAV ANGAGVILSV CDDEVARYET ATLTAVAVPA LLLPPPTTSL DEHLVAGLPA
0301: LEPYARLFHR YYAIATPSAT QRLLLGLLEA PPSWAPDALD AAVQLVELLR AAEDYASGVR LPRNWMHLHF LRAIGIAMSM RAGVAADAAA ALLFRILSQP
0401: ALLFPPLSQV EGVEIQHAPI GGYSSNYRKQ IEVPAAEATI EATAQGIASM LCAHGPEVEW RICTIWEAAY GLIPLNSSAV DLPEIIVATP LQPPILSWNL
0501: YIPLLKVLEY LPRGSPSEAC LMKIFVATVE TILSRTFPPE SSRELTRKAR SSFTTRSATK NLAMSELRAM VHALFLESCA GVELASRLLF VVLTVCVSHE
0601: AQSSGSKRPR SEYASTTENI EANQPVSNNQ TANRKSRNVK GQGPVAAFDS YVLAAVCALA CEVQLYPMIS GGGNFSNSAV AGTITKPVKI NGSSKEYGAG
0701: IDSAISHTRR ILAILEALFS LKPSSVGTPW SYSSSEIVAA AMVAAHISEL FRRSKALTHA LSGLMRCKWD KEIHKRASSL YNLIDVHSKV VASIVDKAEP
0801: LEAYLKNTPV QKDSVTCLNW KQENTCASTT CFDTAVTSAS RTEMNPRGNH KYARHSDEGS GRPSEKGIKD FLLDASDLAN FLTADRLAGF YCGTQKLLRS
0901: VLAEKPELSF SVVSLLWHKL IAAPEIQPTA ESTSAQQGWR QVVDALCNVV SATPAKAAAA VVLQAERELQ PWIAKDDEEG QKMWKINQRI VKVLVELMRN
1001: HDRPESLVIL ASASDLLLRA TDGMLVDGEA CTLPQLELLE ATARAIQPVL AWGPSGLAVV DGLSNLLKCR LPATIRCLSH PSAHVRALST SVLRDIMNQS
1101: SIPIKVTPKL PTTEKNGMNS PSYRFFNAAS IDWKADIQNC LNWEAHSLLS TTMPTQFLDT AARELGCTIS LSQ
0101: VYSKEAHPFA SFISLVCPSS ENDYSEQWAL ACGEILRILT HYNRPIYKTE QQNGDTERNC LSKATTSGSP TSEPKAGSPT QHERKPLRPL SPWISDILLA
0201: APLGIRSDYF RWCSGVMGKY AAGELKPPTI ASRGSGKHPQ LMPSTPRWAV ANGAGVILSV CDDEVARYET ATLTAVAVPA LLLPPPTTSL DEHLVAGLPA
0301: LEPYARLFHR YYAIATPSAT QRLLLGLLEA PPSWAPDALD AAVQLVELLR AAEDYASGVR LPRNWMHLHF LRAIGIAMSM RAGVAADAAA ALLFRILSQP
0401: ALLFPPLSQV EGVEIQHAPI GGYSSNYRKQ IEVPAAEATI EATAQGIASM LCAHGPEVEW RICTIWEAAY GLIPLNSSAV DLPEIIVATP LQPPILSWNL
0501: YIPLLKVLEY LPRGSPSEAC LMKIFVATVE TILSRTFPPE SSRELTRKAR SSFTTRSATK NLAMSELRAM VHALFLESCA GVELASRLLF VVLTVCVSHE
0601: AQSSGSKRPR SEYASTTENI EANQPVSNNQ TANRKSRNVK GQGPVAAFDS YVLAAVCALA CEVQLYPMIS GGGNFSNSAV AGTITKPVKI NGSSKEYGAG
0701: IDSAISHTRR ILAILEALFS LKPSSVGTPW SYSSSEIVAA AMVAAHISEL FRRSKALTHA LSGLMRCKWD KEIHKRASSL YNLIDVHSKV VASIVDKAEP
0801: LEAYLKNTPV QKDSVTCLNW KQENTCASTT CFDTAVTSAS RTEMNPRGNH KYARHSDEGS GRPSEKGIKD FLLDASDLAN FLTADRLAGF YCGTQKLLRS
0901: VLAEKPELSF SVVSLLWHKL IAAPEIQPTA ESTSAQQGWR QVVDALCNVV SATPAKAAAA VVLQAERELQ PWIAKDDEEG QKMWKINQRI VKVLVELMRN
1001: HDRPESLVIL ASASDLLLRA TDGMLVDGEA CTLPQLELLE ATARAIQPVL AWGPSGLAVV DGLSNLLKCR LPATIRCLSH PSAHVRALST SVLRDIMNQS
1101: SIPIKVTPKL PTTEKNGMNS PSYRFFNAAS IDWKADIQNC LNWEAHSLLS TTMPTQFLDT AARELGCTIS LSQ
Arabidopsis Description
GIProtein GIGANTEA [Source:UniProtKB/Swiss-Prot;Acc:Q9SQI2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.