Factsheet for GSMUA_Achr7P09770_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P22610_001
GSMUA_Achr7P11200_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22770.1	GSMUA_Achr7P11200_001	AT1G68050.1	17704763
AT1G22770.1	GSMUA_Achr7P11200_001	AT1G68050.1	17872410
AT1G22770.1	GSMUA_Achr3P22610_001	AT3G11540.1	15155885

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	87.76	85.14
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	45.25	82.77
KXG31676	Sorghum	nucleus	76.94	75.22
Os01t0182600-03	Rice	nucleus	76.58	75.0
TraesCS3D01G118200.2	Wheat	nucleus	74.82	73.72
Zm00001d008826_P078	Maize	nucleus	76.67	73.69
TraesCS3A01G116300.1	Wheat	cytosol, nucleus, plasma membrane	74.91	73.68
TraesCS3B01G135400.1	Wheat	cytosol, nucleus, plasma membrane	74.82	73.59
Zm00001d039589_P136	Maize	plasma membrane	76.32	73.54
HORVU3Hr1G021150.2	Barley	cytosol	15.67	71.2
VIT_18s0157g00020.t01	Wine grape	cytosol, peroxisome, plasma membrane	73.06	70.94
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	24.65	70.0
KRH35085	Soybean	cytosol, nucleus, plasma membrane	72.01	69.5
KRG91704	Soybean	cytosol	71.57	69.02
HORVU3Hr1G021140.2	Barley	plastid	59.15	68.78
Solyc12g056650.1.1	Tomato	nucleus	69.45	67.61
Solyc04g071990.2.1	Tomato	cytosol	69.37	67.52
KRH08640	Soybean	cytosol	64.7	67.18
AT1G22770.1	Thale cress	cytosol	69.28	67.09
Bra024536.1-P	Field mustard	cytosol, nucleus, plasma membrane	69.1	67.04
CDY21388	Canola	cytosol, nucleus, plasma membrane	69.01	66.95
CDY04787	Canola	cytosol, nucleus, plasma membrane	68.84	66.84
PGSC0003DMT400048370	Potato	nucleus, plasma membrane, plastid	51.32	66.02
PGSC0003DMT400002842	Potato	plastid	2.9	29.46

Protein Annotations

EnsemblPlants:GSMUA_Achr7P09770_001	EnsemblPlants:GSMUA_Achr7T09770_001	EnsemblPlantsGene:GSMUA_Achr7G09770_001	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150
GO:GO:0009628	GO:GO:0009791	GO:GO:2000028	InterPro:GIGANTEA	PANTHER:PTHR36319	PRINTS:PR02081
SEG:seg	UniParc:UPI00029520C3	UniProt:M0TG65	MapMan:26.1.2.3.2	:	:

Description

Protein GIGANTEA [Source:GMGC_GENE;Acc:GSMUA_Achr7G09770_001]

Coordinates

chr7:+:7952937..7969560

Molecular Weight (calculated)

124393.0 Da

IEP (calculated)

6.998

GRAVY (calculated)

-0.003

Length

1136 amino acids

Sequence
(BLAST)

0001: MAVSNEKWID GLQFSSLFWP PPQDETQRQA QVLAYVEYFS QFTSEEFPED IAQLIQSHYP SKEKRLLDEV LALFILHHPE HGHAIVHPIL SLIIDGTLVY
0101: NRNNPPFSSF ISLVSQNSEK QCSEQWALAC GEILRILTHY NRPIFKAECH NTGTERSNSC NHATTSKSEK QEANNPILQE HDRKPLRPLS PWITDILLAS
0201: PLGIRSDYFR WCGGVMGKYA AGGELKPPTT ACSHGSGKHP LLMPSTPRWA VANGAGVILS VCDEEVAHYE TANLTAAAVP ALLLPPPTTP LDEHLVAGLP
0301: PLEPYARLFH RYYAIATPSA TQRLLLGLLE APPSWAPDAL DAAVQLVELL RAAEDYASGM RLPRNWMHLH FLRAIGIAMS MRAGVAADAA AALLFRILSQ
0401: PTLLFPPLRH AEGVEVHHEP LGGFISSYKK QLEVPASEAS IEATAQGIAS MLCAHGPDVE WRMCTIWEAA YGLLSLSSSA VDLPEIVVAA PLQPPPLSWN
0501: LYLPLLKVLE YLPRGSPSEA CLIRLFVATV EAILRRTFPS ESSTKQKRKS RLHGSMWSAT KNFAIAELHT MIHSLFLESC ATMDLASRLL FVVLTVCVSH
0601: EALPNGSKRS TDYGSYSADE FTEEPQVVNG RAANRNKIRK KQGPVSTFDS YVLAAVCALA CELQLFPIIS KNGIHSDSKK SAKSIKAAKT NGIAYELHST
0701: IRSAVCHTRR ILGILEALFS LKPSSIGTSW SYGSNEIVAA AMVAAHVSEL FGRSKACMNA LSIMMRCKWD VEISTRASSL YNLIDKHGKI VASIVHKAEP
0801: LEAQLVHAQV RKDDPTCSSG TFVKAGKGIL STDTSIETSG KSFSSLPVDA SDLANFLMTD WYVGYNCGAQ TLLRSVLAEK QELCFSVVSL LWHKLIAAPE
0901: TKMSAESTSA HQGWRQVVDA ICNVVPASPT KASTAIVLQA EKDLQPWIAR DDEQGQRMWK INHRIVKLIV ELMRNHECPE ALIILASASD LLLRATDGLL
1001: VDGEVCTLPQ LELLEVTAKA VQLVIHWGET GLAVADGLAN LLKCRLSSTV RCLSHPSAHV RALSTSVLRD ILHSSPTTIS SGCLNVDGQR NCNSSYHWQA
1101: DMEKCIQWEA QSRLATGLTL AYLCAAAKEL GCPIDC

Best Arabidopsis Sequence Match ( AT1G22770.1 )
(BLAST)

0001: MASSSSSERW IDGLQFSSLL WPPPRDPQQH KDQVVAYVEY FGQFTSEQFP DDIAELVRHQ YPSTEKRLLD DVLAMFVLHH PEHGHAVILP IISCLIDGSL
0101: VYSKEAHPFA SFISLVCPSS ENDYSEQWAL ACGEILRILT HYNRPIYKTE QQNGDTERNC LSKATTSGSP TSEPKAGSPT QHERKPLRPL SPWISDILLA
0201: APLGIRSDYF RWCSGVMGKY AAGELKPPTI ASRGSGKHPQ LMPSTPRWAV ANGAGVILSV CDDEVARYET ATLTAVAVPA LLLPPPTTSL DEHLVAGLPA
0301: LEPYARLFHR YYAIATPSAT QRLLLGLLEA PPSWAPDALD AAVQLVELLR AAEDYASGVR LPRNWMHLHF LRAIGIAMSM RAGVAADAAA ALLFRILSQP
0401: ALLFPPLSQV EGVEIQHAPI GGYSSNYRKQ IEVPAAEATI EATAQGIASM LCAHGPEVEW RICTIWEAAY GLIPLNSSAV DLPEIIVATP LQPPILSWNL
0501: YIPLLKVLEY LPRGSPSEAC LMKIFVATVE TILSRTFPPE SSRELTRKAR SSFTTRSATK NLAMSELRAM VHALFLESCA GVELASRLLF VVLTVCVSHE
0601: AQSSGSKRPR SEYASTTENI EANQPVSNNQ TANRKSRNVK GQGPVAAFDS YVLAAVCALA CEVQLYPMIS GGGNFSNSAV AGTITKPVKI NGSSKEYGAG
0701: IDSAISHTRR ILAILEALFS LKPSSVGTPW SYSSSEIVAA AMVAAHISEL FRRSKALTHA LSGLMRCKWD KEIHKRASSL YNLIDVHSKV VASIVDKAEP
0801: LEAYLKNTPV QKDSVTCLNW KQENTCASTT CFDTAVTSAS RTEMNPRGNH KYARHSDEGS GRPSEKGIKD FLLDASDLAN FLTADRLAGF YCGTQKLLRS
0901: VLAEKPELSF SVVSLLWHKL IAAPEIQPTA ESTSAQQGWR QVVDALCNVV SATPAKAAAA VVLQAERELQ PWIAKDDEEG QKMWKINQRI VKVLVELMRN
1001: HDRPESLVIL ASASDLLLRA TDGMLVDGEA CTLPQLELLE ATARAIQPVL AWGPSGLAVV DGLSNLLKCR LPATIRCLSH PSAHVRALST SVLRDIMNQS
1101: SIPIKVTPKL PTTEKNGMNS PSYRFFNAAS IDWKADIQNC LNWEAHSLLS TTMPTQFLDT AARELGCTIS LSQ

Arabidopsis Description

GIProtein GIGANTEA [Source:UniProtKB/Swiss-Prot;Acc:Q9SQI2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.