Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g056650.1.1 | Tomato | nucleus | 96.38 | 72.92 |
| PGSC0003DMT400002842 | Potato | plastid | 8.49 | 66.96 |
| HORVU3Hr1G021150.2 | Barley | cytosol | 18.57 | 65.6 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion, nucleus, plastid | 28.88 | 63.75 |
| VIT_18s0157g00020.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 76.1 | 57.44 |
| KRH35085 | Soybean | cytosol, nucleus, plasma membrane | 75.2 | 56.41 |
| KRG91704 | Soybean | cytosol | 74.75 | 56.03 |
| AT1G22770.1 | Thale cress | cytosol | 71.01 | 53.45 |
| KRH08640 | Soybean | cytosol | 66.02 | 53.29 |
| Bra024536.1-P | Field mustard | cytosol, nucleus, plasma membrane | 69.65 | 52.52 |
| CDY21388 | Canola | cytosol, nucleus, plasma membrane | 69.54 | 52.43 |
| CDY04787 | Canola | cytosol, nucleus, plasma membrane | 69.2 | 52.22 |
| GSMUA_Achr7P09770_001 | Banana | cytosol | 66.02 | 51.32 |
| Os01t0182600-03 | Rice | nucleus | 66.02 | 50.26 |
| KXG31676 | Sorghum | nucleus | 65.91 | 50.09 |
| TraesCS3B01G135400.1 | Wheat | cytosol, nucleus, plasma membrane | 65.01 | 49.7 |
| TraesCS3D01G118200.2 | Wheat | nucleus | 64.89 | 49.7 |
| TraesCS3A01G116300.1 | Wheat | cytosol, nucleus, plasma membrane | 64.89 | 49.61 |
| Zm00001d039589_P136 | Maize | plasma membrane | 66.02 | 49.45 |
| Zm00001d008826_P078 | Maize | nucleus | 66.02 | 49.32 |
| GSMUA_Achr10P... | Banana | cytosol | 65.23 | 49.19 |
| HORVU3Hr1G021140.2 | Barley | plastid | 46.43 | 41.97 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome | 28.43 | 40.42 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400048370 | EnsemblPlantsGene:PGSC0003DMG400018791 | GO:GO:0000003 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009628 |
| GO:GO:0009791 | GO:GO:2000028 | InterPro:GIGANTEA | PANTHER:PTHR36319 | PGSC:PGSC0003DMG400018791 | PRINTS:PR02081 |
| SEG:seg | UniParc:UPI0002965A49 | UniProt:M1BMC0 | MapMan:26.1.2.3.2 | : | : |
Description
Protein GIGANTEA [Source:PGSC_GENE;Acc:PGSC0003DMG400018791]
Coordinates
chr12:-:54722764..54731641
Molecular Weight (calculated)
96607.4 Da
IEP (calculated)
6.801
GRAVY (calculated)
-0.025
Length
883 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEHLVAGLP PLEPYARLFH RYYAIASPSA TQRLLVGLLE APPSWAPDAL DAAVQLVELL RAAEDYASGL RLPRNWMHLH FLRAIGIAMS MRAGIAADSA
101: AALLFRVLSQ PALLFPPLRQ IEEIEVQHEP LGGDTSCNKK QREVTAAEAT VEATAQGIAS MLCAHGPEVE WRICTIWEAA YGLIPLSSSA VDLPEIVVAT
201: PLQPPILSWN LYTPLLKVLE YLPRGSPSET CLMKIFVATV EAILQRTFPP DSSREETRKT RYVFGPAFKN LAVAELRTMV HSLFLESCAS VELASRLLFV
301: ILTVCVSHEA KPNGNKRPKG EDSHPPSEIG VDTPATIGKQ RPIGSKKVKK QGPVAAFDSY VLASVCGLSC ELQLFSMISR GPNHPDPKII MDEAKPANDS
401: SNELRNGIHS AVSHTRRMLE ILEALFSLKP SSVGTSWSFS SNEIVAAAMV AAHISDLFKR SKACMHSLSI LIRCKWDNEI HSRASSIYNL IDIHSKTVAS
501: IVNKAEPLEA YLIHAPVLKE RPRCLNGKKH YKYTSRNCLT SEQPSGPLCK DSYDCKSSLV CEKASDSSSH SSEIAGCTIS KVFANFSLDA TDLANFLTKD
601: RHFGFNCNAQ DLLKSVLAEK QELCFSVVSL LWHKLIASPE TQPIAESTSA QQGWRQVVDA LCNVVSAAPG KAATAIVLQA ERELQPWIAK DDDLGQQMWR
701: INQRIVKLIA ELIRNHDIAE SLVILASNPD LLLRATDGML VDGETCTLPQ LELLEVTARA IQPVLDWGES GQSVADGLTN LLKCRLPATV RCVSHPSAHV
801: RALSTSVLRD IMYAGSVKPS AKQAADVNGI HNPAYQYLGI SISDWKADIE KCLMWEANSR LENGMSAQFL DTAARELGCT ISV
101: AALLFRVLSQ PALLFPPLRQ IEEIEVQHEP LGGDTSCNKK QREVTAAEAT VEATAQGIAS MLCAHGPEVE WRICTIWEAA YGLIPLSSSA VDLPEIVVAT
201: PLQPPILSWN LYTPLLKVLE YLPRGSPSET CLMKIFVATV EAILQRTFPP DSSREETRKT RYVFGPAFKN LAVAELRTMV HSLFLESCAS VELASRLLFV
301: ILTVCVSHEA KPNGNKRPKG EDSHPPSEIG VDTPATIGKQ RPIGSKKVKK QGPVAAFDSY VLASVCGLSC ELQLFSMISR GPNHPDPKII MDEAKPANDS
401: SNELRNGIHS AVSHTRRMLE ILEALFSLKP SSVGTSWSFS SNEIVAAAMV AAHISDLFKR SKACMHSLSI LIRCKWDNEI HSRASSIYNL IDIHSKTVAS
501: IVNKAEPLEA YLIHAPVLKE RPRCLNGKKH YKYTSRNCLT SEQPSGPLCK DSYDCKSSLV CEKASDSSSH SSEIAGCTIS KVFANFSLDA TDLANFLTKD
601: RHFGFNCNAQ DLLKSVLAEK QELCFSVVSL LWHKLIASPE TQPIAESTSA QQGWRQVVDA LCNVVSAAPG KAATAIVLQA ERELQPWIAK DDDLGQQMWR
701: INQRIVKLIA ELIRNHDIAE SLVILASNPD LLLRATDGML VDGETCTLPQ LELLEVTARA IQPVLDWGES GQSVADGLTN LLKCRLPATV RCVSHPSAHV
801: RALSTSVLRD IMYAGSVKPS AKQAADVNGI HNPAYQYLGI SISDWKADIE KCLMWEANSR LENGMSAQFL DTAARELGCT ISV
0001: MASSSSSERW IDGLQFSSLL WPPPRDPQQH KDQVVAYVEY FGQFTSEQFP DDIAELVRHQ YPSTEKRLLD DVLAMFVLHH PEHGHAVILP IISCLIDGSL
0101: VYSKEAHPFA SFISLVCPSS ENDYSEQWAL ACGEILRILT HYNRPIYKTE QQNGDTERNC LSKATTSGSP TSEPKAGSPT QHERKPLRPL SPWISDILLA
0201: APLGIRSDYF RWCSGVMGKY AAGELKPPTI ASRGSGKHPQ LMPSTPRWAV ANGAGVILSV CDDEVARYET ATLTAVAVPA LLLPPPTTSL DEHLVAGLPA
0301: LEPYARLFHR YYAIATPSAT QRLLLGLLEA PPSWAPDALD AAVQLVELLR AAEDYASGVR LPRNWMHLHF LRAIGIAMSM RAGVAADAAA ALLFRILSQP
0401: ALLFPPLSQV EGVEIQHAPI GGYSSNYRKQ IEVPAAEATI EATAQGIASM LCAHGPEVEW RICTIWEAAY GLIPLNSSAV DLPEIIVATP LQPPILSWNL
0501: YIPLLKVLEY LPRGSPSEAC LMKIFVATVE TILSRTFPPE SSRELTRKAR SSFTTRSATK NLAMSELRAM VHALFLESCA GVELASRLLF VVLTVCVSHE
0601: AQSSGSKRPR SEYASTTENI EANQPVSNNQ TANRKSRNVK GQGPVAAFDS YVLAAVCALA CEVQLYPMIS GGGNFSNSAV AGTITKPVKI NGSSKEYGAG
0701: IDSAISHTRR ILAILEALFS LKPSSVGTPW SYSSSEIVAA AMVAAHISEL FRRSKALTHA LSGLMRCKWD KEIHKRASSL YNLIDVHSKV VASIVDKAEP
0801: LEAYLKNTPV QKDSVTCLNW KQENTCASTT CFDTAVTSAS RTEMNPRGNH KYARHSDEGS GRPSEKGIKD FLLDASDLAN FLTADRLAGF YCGTQKLLRS
0901: VLAEKPELSF SVVSLLWHKL IAAPEIQPTA ESTSAQQGWR QVVDALCNVV SATPAKAAAA VVLQAERELQ PWIAKDDEEG QKMWKINQRI VKVLVELMRN
1001: HDRPESLVIL ASASDLLLRA TDGMLVDGEA CTLPQLELLE ATARAIQPVL AWGPSGLAVV DGLSNLLKCR LPATIRCLSH PSAHVRALST SVLRDIMNQS
1101: SIPIKVTPKL PTTEKNGMNS PSYRFFNAAS IDWKADIQNC LNWEAHSLLS TTMPTQFLDT AARELGCTIS LSQ
0101: VYSKEAHPFA SFISLVCPSS ENDYSEQWAL ACGEILRILT HYNRPIYKTE QQNGDTERNC LSKATTSGSP TSEPKAGSPT QHERKPLRPL SPWISDILLA
0201: APLGIRSDYF RWCSGVMGKY AAGELKPPTI ASRGSGKHPQ LMPSTPRWAV ANGAGVILSV CDDEVARYET ATLTAVAVPA LLLPPPTTSL DEHLVAGLPA
0301: LEPYARLFHR YYAIATPSAT QRLLLGLLEA PPSWAPDALD AAVQLVELLR AAEDYASGVR LPRNWMHLHF LRAIGIAMSM RAGVAADAAA ALLFRILSQP
0401: ALLFPPLSQV EGVEIQHAPI GGYSSNYRKQ IEVPAAEATI EATAQGIASM LCAHGPEVEW RICTIWEAAY GLIPLNSSAV DLPEIIVATP LQPPILSWNL
0501: YIPLLKVLEY LPRGSPSEAC LMKIFVATVE TILSRTFPPE SSRELTRKAR SSFTTRSATK NLAMSELRAM VHALFLESCA GVELASRLLF VVLTVCVSHE
0601: AQSSGSKRPR SEYASTTENI EANQPVSNNQ TANRKSRNVK GQGPVAAFDS YVLAAVCALA CEVQLYPMIS GGGNFSNSAV AGTITKPVKI NGSSKEYGAG
0701: IDSAISHTRR ILAILEALFS LKPSSVGTPW SYSSSEIVAA AMVAAHISEL FRRSKALTHA LSGLMRCKWD KEIHKRASSL YNLIDVHSKV VASIVDKAEP
0801: LEAYLKNTPV QKDSVTCLNW KQENTCASTT CFDTAVTSAS RTEMNPRGNH KYARHSDEGS GRPSEKGIKD FLLDASDLAN FLTADRLAGF YCGTQKLLRS
0901: VLAEKPELSF SVVSLLWHKL IAAPEIQPTA ESTSAQQGWR QVVDALCNVV SATPAKAAAA VVLQAERELQ PWIAKDDEEG QKMWKINQRI VKVLVELMRN
1001: HDRPESLVIL ASASDLLLRA TDGMLVDGEA CTLPQLELLE ATARAIQPVL AWGPSGLAVV DGLSNLLKCR LPATIRCLSH PSAHVRALST SVLRDIMNQS
1101: SIPIKVTPKL PTTEKNGMNS PSYRFFNAAS IDWKADIQNC LNWEAHSLLS TTMPTQFLDT AARELGCTIS LSQ
Arabidopsis Description
GIProtein GIGANTEA [Source:UniProtKB/Swiss-Prot;Acc:Q9SQI2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.