CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03487
KRH38138
KRH41723
KRH54567
KRH56903
KRH60424
KRH63324

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22770.1	KRH41723	AT1G68050.1	17704763
AT1G22770.1	KRH60424	AT1G68050.1	17704763
AT1G22770.1	KRH41723	AT1G68050.1	17872410
AT1G22770.1	KRH60424	AT1G68050.1	17872410
AT1G22770.1	KRH38138	AT3G11540.1	15155885
AT1G22770.1	KRH03487	AT5G62430.1	17872410
AT1G22770.1	KRH54567	AT5G62430.1	17872410
AT1G22770.1	KRH56903	AT5G62430.1	17872410
AT1G22770.1	KRH63324	AT5G62430.1	17872410

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35085	Soybean	cytosol, nucleus, plasma membrane	96.77	96.86
VIT_18s0157g00020.t01	Wine grape	cytosol, peroxisome, plasma membrane	81.58	82.14
KRH08640	Soybean	cytosol	75.72	81.54
Solyc04g071990.2.1	Tomato	cytosol	75.3	76.01
Solyc12g056650.1.1	Tomato	nucleus	74.87	75.58
AT1G22770.1	Thale cress	cytosol	74.96	75.28
PGSC0003DMT400048370	Potato	nucleus, plasma membrane, plastid	56.03	74.75
Bra024536.1-P	Field mustard	cytosol, nucleus, plasma membrane	74.19	74.64
CDY21388	Canola	cytosol, nucleus, plasma membrane	74.11	74.55
CDY04787	Canola	cytosol, nucleus, plasma membrane	74.02	74.53
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	38.62	73.27
GSMUA_Achr7P09770_001	Banana	cytosol	69.02	71.57
GSMUA_Achr10P...	Banana	cytosol	70.03	70.45
Os01t0182600-03	Rice	nucleus	68.85	69.91
KXG31676	Sorghum	nucleus	68.42	69.36
TraesCS3D01G118200.2	Wheat	nucleus	67.32	68.78
TraesCS3B01G135400.1	Wheat	cytosol, nucleus, plasma membrane	67.4	68.74
Zm00001d039589_P136	Maize	plasma membrane	68.76	68.7
TraesCS3A01G116300.1	Wheat	cytosol, nucleus, plasma membrane	67.32	68.66
Zm00001d008826_P078	Maize	nucleus	68.42	68.19
HORVU3Hr1G021150.2	Barley	cytosol	14.35	67.6
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	22.24	65.5
HORVU3Hr1G021140.2	Barley	plastid	52.97	63.87
PGSC0003DMT400002842	Potato	plastid	4.41	46.43

Protein Annotations

EMBL:ACUP02012699	EnsemblPlants:KRG91704	EnsemblPlantsGene:GLYMA_20G170000	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150
GO:GO:0009628	GO:GO:0009791	GO:GO:2000028	InterPro:GIGANTEA	PANTHER:PTHR36319	PRINTS:PR02081
ProteinID:KRG91704	ProteinID:KRG91704.1	SEG:seg	UniParc:UPI0002968B5C	UniProt:K7N3Z1	MapMan:26.1.2.3.2

Description

hypothetical protein

Coordinates

chr20:-:40750049..40773605

Molecular Weight (calculated)

128884.0 Da

IEP (calculated)

6.677

GRAVY (calculated)

-0.047

Length

1178 amino acids

Sequence
(BLAST)

0001: MSSASSLMAA SSERWIDRLQ YSSLFWPPPP DGQQRKDQIA AYVEYFIQFT SEQFADDIAE LIRNRYPSKD ILLFDDVLAT FVLHHPEHGH AVVLPIISCI
0101: IDGTLVYDKA SPPFASFISS VCPKIENEYS EQWALACGEI LRILTHYNRP IYKTERQSGE TERSTSGSHA TTSEPGKSGH NSLTQQEKKP IRPLSPWITD
0201: ILLSSPVGIR SDYFRWCSGV MGKYAAGELK PPSTASSRGS GKHPQLVPST PRWAVANGAG VILSVCDDEV ARNETTTLTA AAVPALLLPP PTTALDEHLV
0301: AGLPALEPYA RLFHRYYAIA TPSATQRLLL GLLEAPPSWA PDALDAAVQL VELLRAAEDY ASGIRAKNLP RNWMHLHFLR AIGTAMSMRA GIAADAAAAL
0401: LFRILSQPAL LFPPLRQVDG VEVQHEPLGG YISSYKKQIE VPAAEASIEA TAQGIASMLC AHGPEVEWRI CTIWEAAYGL IPTSSSAVDL PEIIVATPLQ
0501: PPILSWNLYI PLLKVLEYLP RGSPSEACLM KIFAATVEAI LQRTFPPEST REQNRKSKYL AGIGSASKNL AMAELRTMVH SLFLESCASV ELASRLLFVV
0601: LTVCVSHEAQ FSGSKRPRGE DNYSAEDIIE DLQTSENQKV SKNRKLKKQG PVAAFDSYVL AAVCALACEL QLFPLISCGN NRLASNNVQD IAKPVRLNGS
0701: SHELQNGLDS AMRHTHRILA ILEALFSLKP SSVGTPWSYS SNEIVAAAMV AAHVSELFRR SKTCMHALSV LIRCKWDNEI HSRASSLYNL IDIHSKAVAS
0801: IVNKAEPLEA TLIHVPIWKD SLVCVGVKRQ NQCESSSCFA PGQTSVVPSE DSFPSKVDHN SQKTPCSKDA SDYTLGKGVT GFSLDASDLA NFLTMDRHIG
0901: LNCNGQIFLR STLAEKQELC FSVVSLLWHK LIASPETQPC AESTSAQQGW RQVVDALCNV VSASPTKAAT AVVLQAEREL QPWIAKDDDL GQKMWRINQR
1001: IVKLIVELMR NHETSESLVI VASSSDLLLR ATDGMLVDGE ACTLPQLELL EATARAVQPV LEFGESGLAV ADGLSNLLKC RLSATIRCLS HPSAHVRALS
1101: ISVLRDILHT GSIRCSPKPR RLNGTHNPSY QYFNLDVIDW QADIEKCLTW EAHSRLSNGL SINFLDTAAK ELGCTISM

Best Arabidopsis Sequence Match ( AT1G22770.1 )
(BLAST)

0001: MASSSSSERW IDGLQFSSLL WPPPRDPQQH KDQVVAYVEY FGQFTSEQFP DDIAELVRHQ YPSTEKRLLD DVLAMFVLHH PEHGHAVILP IISCLIDGSL
0101: VYSKEAHPFA SFISLVCPSS ENDYSEQWAL ACGEILRILT HYNRPIYKTE QQNGDTERNC LSKATTSGSP TSEPKAGSPT QHERKPLRPL SPWISDILLA
0201: APLGIRSDYF RWCSGVMGKY AAGELKPPTI ASRGSGKHPQ LMPSTPRWAV ANGAGVILSV CDDEVARYET ATLTAVAVPA LLLPPPTTSL DEHLVAGLPA
0301: LEPYARLFHR YYAIATPSAT QRLLLGLLEA PPSWAPDALD AAVQLVELLR AAEDYASGVR LPRNWMHLHF LRAIGIAMSM RAGVAADAAA ALLFRILSQP
0401: ALLFPPLSQV EGVEIQHAPI GGYSSNYRKQ IEVPAAEATI EATAQGIASM LCAHGPEVEW RICTIWEAAY GLIPLNSSAV DLPEIIVATP LQPPILSWNL
0501: YIPLLKVLEY LPRGSPSEAC LMKIFVATVE TILSRTFPPE SSRELTRKAR SSFTTRSATK NLAMSELRAM VHALFLESCA GVELASRLLF VVLTVCVSHE
0601: AQSSGSKRPR SEYASTTENI EANQPVSNNQ TANRKSRNVK GQGPVAAFDS YVLAAVCALA CEVQLYPMIS GGGNFSNSAV AGTITKPVKI NGSSKEYGAG
0701: IDSAISHTRR ILAILEALFS LKPSSVGTPW SYSSSEIVAA AMVAAHISEL FRRSKALTHA LSGLMRCKWD KEIHKRASSL YNLIDVHSKV VASIVDKAEP
0801: LEAYLKNTPV QKDSVTCLNW KQENTCASTT CFDTAVTSAS RTEMNPRGNH KYARHSDEGS GRPSEKGIKD FLLDASDLAN FLTADRLAGF YCGTQKLLRS
0901: VLAEKPELSF SVVSLLWHKL IAAPEIQPTA ESTSAQQGWR QVVDALCNVV SATPAKAAAA VVLQAERELQ PWIAKDDEEG QKMWKINQRI VKVLVELMRN
1001: HDRPESLVIL ASASDLLLRA TDGMLVDGEA CTLPQLELLE ATARAIQPVL AWGPSGLAVV DGLSNLLKCR LPATIRCLSH PSAHVRALST SVLRDIMNQS
1101: SIPIKVTPKL PTTEKNGMNS PSYRFFNAAS IDWKADIQNC LNWEAHSLLS TTMPTQFLDT AARELGCTIS LSQ

Arabidopsis Description

GIProtein GIGANTEA [Source:UniProtKB/Swiss-Prot;Acc:Q9SQI2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.