Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY21388 | Canola | cytosol, nucleus, plasma membrane | 98.97 | 98.89 |
| Bra024536.1-P | Field mustard | cytosol, nucleus, plasma membrane | 98.38 | 98.29 |
| AT1G22770.1 | Thale cress | cytosol | 90.51 | 90.28 |
| KRG91704 | Soybean | cytosol | 74.53 | 74.02 |
| KRH35085 | Soybean | cytosol, nucleus, plasma membrane | 74.44 | 74.0 |
| VIT_18s0157g00020.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 73.85 | 73.85 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome | 38.21 | 71.98 |
| KRH08640 | Soybean | cytosol | 66.41 | 71.02 |
| Solyc04g071990.2.1 | Tomato | cytosol | 70.17 | 70.35 |
| Solyc12g056650.1.1 | Tomato | nucleus | 69.91 | 70.09 |
| PGSC0003DMT400048370 | Potato | nucleus, plasma membrane, plastid | 52.22 | 69.2 |
| GSMUA_Achr7P09770_001 | Banana | cytosol | 66.84 | 68.84 |
| Os01t0182600-03 | Rice | nucleus | 68.12 | 68.71 |
| KXG31676 | Sorghum | nucleus | 67.18 | 67.64 |
| GSMUA_Achr10P... | Banana | cytosol | 67.69 | 67.63 |
| TraesCS3B01G135400.1 | Wheat | cytosol, nucleus, plasma membrane | 66.67 | 67.53 |
| TraesCS3D01G118200.2 | Wheat | nucleus | 66.41 | 67.39 |
| TraesCS3A01G116300.1 | Wheat | cytosol, nucleus, plasma membrane | 66.5 | 67.36 |
| Zm00001d039589_P136 | Maize | plasma membrane | 67.44 | 66.92 |
| Zm00001d008826_P078 | Maize | nucleus | 67.44 | 66.75 |
| HORVU3Hr1G021150.2 | Barley | cytosol | 14.19 | 66.4 |
| HORVU3Hr1G021140.2 | Barley | plastid | 52.05 | 62.33 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion, nucleus, plastid | 21.28 | 62.25 |
| PGSC0003DMT400002842 | Potato | plastid | 3.93 | 41.07 |
Protein Annotations
| EnsemblPlants:CDY04787 | EnsemblPlantsGene:GSBRNA2T00119480001 | GO:A0A078EUZ1 | GO:GO:0000003 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0009628 | GO:GO:0009791 | GO:GO:2000028 | InterPro:GIGANTEA | PANTHER:PTHR36319 | PRINTS:PR02081 |
| ProteinID:CDY04787 | ProteinID:CDY04787.1 | SEG:seg | UniParc:UPI0004EE3D79 | MapMan:26.1.2.3.2 | : |
Description
BnaC05g18020D
Coordinates
chrLK031957:-:713318..718848
Molecular Weight (calculated)
126913.0 Da
IEP (calculated)
6.961
GRAVY (calculated)
-0.061
Length
1170 amino acids
Sequence
(BLAST)
(BLAST)
0001: MTSPTSSERW TDGLQFSSLL WSPPRDPQQH KDQVVAYVEY FGQFTSEQFP DDIAELVRNQ YPSTEKRLLD DVLAMFVLHH PEHGHAVILP IISCLIDGTL
0101: VYSKEAHPFA SFISLVSPTS ENDYSEQWAL ACGEILRILT HYNRPIYKTE QQNGETESKA STSGSPTLSE TKAVSPGQHE RKPLRPLSPW ISDILLAAPL
0201: GIRSDYFRWC SGVMGKYAAG ELKPPTIATR GSGKHPQYMP STPRWAVANG AGVILSVCDD EVARYETATL TAVAVPALLL PPPTTSLDEH LVAGLPALEP
0301: YARLFHRYYA IATPSATQRL LLGLLEAPPS WAPDALDAAV QLVELLRAAE DYASGVRLPR NWMHLHFLRA IGIAMSMRAG VAADAAAALL FRILSQPALL
0401: FPPLSQAEGV EIKHAPIGGY GSNYRKQIEV PAAEATIEAT AQGIASMLCA HGPEVEWRIC TIWEAAYGLI PLNSSAVDLP EIIVATPLQP PILSWNLYIP
0501: LLKVLEYLPR GSPSEACLMK IFVATVETIL SRTFPPETSI KKARASLATR SSATKNLAMA ELRAMVHALF LESCAGVEIA SRLLFVVLTV CVSHEAQSSG
0601: SKRRRSEEDA TAEENQDNQT SNRKSRNVKG QGPVAAFDSY VLAAVCALAC EVQLYPMISG GGNFSNSAVA ATITKSVKIN GSSNEYGAGV DSAIKHTRRI
0701: LAILEALFSL KPSSVGTPWS YSSSEIVAAA MVAAHISELF RRSKALTHAL SGLMRCKWDK EIHKRASSLY NLIDVHSKVV ASIVDKAEPL EAYLKNAPVQ
0801: KDSLACLNWK QQNTSSAGGF GTAAVTSTSR NEMAPRGGNH KYARHSDEGS GSRSSSEKGI KDLLLDASDL ANFLTADRLA GFYRGTQVLL RSILAEKPEL
0901: SFSVVSLLWH KLIASPEIQP TAESTSAQQG WRQVVDALCN VVSATPAKAA AAVVLQAERE LQPWIAKDDE EGQKMWKINQ RIVKVMVELM RNHDRPESLV
1001: ILASASDLLL RATDGMLVDG EACTLPQLEL LEATARAIQP VLAWGPSGLA VVDGLSNLLK CRLPATIRCL SHPSAHVRAL STSVLRDIMN QSGITTSKAT
1101: PKPPPTITTE KNGTDSPSYR FFNAAAIDWK ADIQKCLNWE AHSLLSTTMP TQFLDTAAGE LGCTISMSSQ
0101: VYSKEAHPFA SFISLVSPTS ENDYSEQWAL ACGEILRILT HYNRPIYKTE QQNGETESKA STSGSPTLSE TKAVSPGQHE RKPLRPLSPW ISDILLAAPL
0201: GIRSDYFRWC SGVMGKYAAG ELKPPTIATR GSGKHPQYMP STPRWAVANG AGVILSVCDD EVARYETATL TAVAVPALLL PPPTTSLDEH LVAGLPALEP
0301: YARLFHRYYA IATPSATQRL LLGLLEAPPS WAPDALDAAV QLVELLRAAE DYASGVRLPR NWMHLHFLRA IGIAMSMRAG VAADAAAALL FRILSQPALL
0401: FPPLSQAEGV EIKHAPIGGY GSNYRKQIEV PAAEATIEAT AQGIASMLCA HGPEVEWRIC TIWEAAYGLI PLNSSAVDLP EIIVATPLQP PILSWNLYIP
0501: LLKVLEYLPR GSPSEACLMK IFVATVETIL SRTFPPETSI KKARASLATR SSATKNLAMA ELRAMVHALF LESCAGVEIA SRLLFVVLTV CVSHEAQSSG
0601: SKRRRSEEDA TAEENQDNQT SNRKSRNVKG QGPVAAFDSY VLAAVCALAC EVQLYPMISG GGNFSNSAVA ATITKSVKIN GSSNEYGAGV DSAIKHTRRI
0701: LAILEALFSL KPSSVGTPWS YSSSEIVAAA MVAAHISELF RRSKALTHAL SGLMRCKWDK EIHKRASSLY NLIDVHSKVV ASIVDKAEPL EAYLKNAPVQ
0801: KDSLACLNWK QQNTSSAGGF GTAAVTSTSR NEMAPRGGNH KYARHSDEGS GSRSSSEKGI KDLLLDASDL ANFLTADRLA GFYRGTQVLL RSILAEKPEL
0901: SFSVVSLLWH KLIASPEIQP TAESTSAQQG WRQVVDALCN VVSATPAKAA AAVVLQAERE LQPWIAKDDE EGQKMWKINQ RIVKVMVELM RNHDRPESLV
1001: ILASASDLLL RATDGMLVDG EACTLPQLEL LEATARAIQP VLAWGPSGLA VVDGLSNLLK CRLPATIRCL SHPSAHVRAL STSVLRDIMN QSGITTSKAT
1101: PKPPPTITTE KNGTDSPSYR FFNAAAIDWK ADIQKCLNWE AHSLLSTTMP TQFLDTAAGE LGCTISMSSQ
0001: MASSSSSERW IDGLQFSSLL WPPPRDPQQH KDQVVAYVEY FGQFTSEQFP DDIAELVRHQ YPSTEKRLLD DVLAMFVLHH PEHGHAVILP IISCLIDGSL
0101: VYSKEAHPFA SFISLVCPSS ENDYSEQWAL ACGEILRILT HYNRPIYKTE QQNGDTERNC LSKATTSGSP TSEPKAGSPT QHERKPLRPL SPWISDILLA
0201: APLGIRSDYF RWCSGVMGKY AAGELKPPTI ASRGSGKHPQ LMPSTPRWAV ANGAGVILSV CDDEVARYET ATLTAVAVPA LLLPPPTTSL DEHLVAGLPA
0301: LEPYARLFHR YYAIATPSAT QRLLLGLLEA PPSWAPDALD AAVQLVELLR AAEDYASGVR LPRNWMHLHF LRAIGIAMSM RAGVAADAAA ALLFRILSQP
0401: ALLFPPLSQV EGVEIQHAPI GGYSSNYRKQ IEVPAAEATI EATAQGIASM LCAHGPEVEW RICTIWEAAY GLIPLNSSAV DLPEIIVATP LQPPILSWNL
0501: YIPLLKVLEY LPRGSPSEAC LMKIFVATVE TILSRTFPPE SSRELTRKAR SSFTTRSATK NLAMSELRAM VHALFLESCA GVELASRLLF VVLTVCVSHE
0601: AQSSGSKRPR SEYASTTENI EANQPVSNNQ TANRKSRNVK GQGPVAAFDS YVLAAVCALA CEVQLYPMIS GGGNFSNSAV AGTITKPVKI NGSSKEYGAG
0701: IDSAISHTRR ILAILEALFS LKPSSVGTPW SYSSSEIVAA AMVAAHISEL FRRSKALTHA LSGLMRCKWD KEIHKRASSL YNLIDVHSKV VASIVDKAEP
0801: LEAYLKNTPV QKDSVTCLNW KQENTCASTT CFDTAVTSAS RTEMNPRGNH KYARHSDEGS GRPSEKGIKD FLLDASDLAN FLTADRLAGF YCGTQKLLRS
0901: VLAEKPELSF SVVSLLWHKL IAAPEIQPTA ESTSAQQGWR QVVDALCNVV SATPAKAAAA VVLQAERELQ PWIAKDDEEG QKMWKINQRI VKVLVELMRN
1001: HDRPESLVIL ASASDLLLRA TDGMLVDGEA CTLPQLELLE ATARAIQPVL AWGPSGLAVV DGLSNLLKCR LPATIRCLSH PSAHVRALST SVLRDIMNQS
1101: SIPIKVTPKL PTTEKNGMNS PSYRFFNAAS IDWKADIQNC LNWEAHSLLS TTMPTQFLDT AARELGCTIS LSQ
0101: VYSKEAHPFA SFISLVCPSS ENDYSEQWAL ACGEILRILT HYNRPIYKTE QQNGDTERNC LSKATTSGSP TSEPKAGSPT QHERKPLRPL SPWISDILLA
0201: APLGIRSDYF RWCSGVMGKY AAGELKPPTI ASRGSGKHPQ LMPSTPRWAV ANGAGVILSV CDDEVARYET ATLTAVAVPA LLLPPPTTSL DEHLVAGLPA
0301: LEPYARLFHR YYAIATPSAT QRLLLGLLEA PPSWAPDALD AAVQLVELLR AAEDYASGVR LPRNWMHLHF LRAIGIAMSM RAGVAADAAA ALLFRILSQP
0401: ALLFPPLSQV EGVEIQHAPI GGYSSNYRKQ IEVPAAEATI EATAQGIASM LCAHGPEVEW RICTIWEAAY GLIPLNSSAV DLPEIIVATP LQPPILSWNL
0501: YIPLLKVLEY LPRGSPSEAC LMKIFVATVE TILSRTFPPE SSRELTRKAR SSFTTRSATK NLAMSELRAM VHALFLESCA GVELASRLLF VVLTVCVSHE
0601: AQSSGSKRPR SEYASTTENI EANQPVSNNQ TANRKSRNVK GQGPVAAFDS YVLAAVCALA CEVQLYPMIS GGGNFSNSAV AGTITKPVKI NGSSKEYGAG
0701: IDSAISHTRR ILAILEALFS LKPSSVGTPW SYSSSEIVAA AMVAAHISEL FRRSKALTHA LSGLMRCKWD KEIHKRASSL YNLIDVHSKV VASIVDKAEP
0801: LEAYLKNTPV QKDSVTCLNW KQENTCASTT CFDTAVTSAS RTEMNPRGNH KYARHSDEGS GRPSEKGIKD FLLDASDLAN FLTADRLAGF YCGTQKLLRS
0901: VLAEKPELSF SVVSLLWHKL IAAPEIQPTA ESTSAQQGWR QVVDALCNVV SATPAKAAAA VVLQAERELQ PWIAKDDEEG QKMWKINQRI VKVLVELMRN
1001: HDRPESLVIL ASASDLLLRA TDGMLVDGEA CTLPQLELLE ATARAIQPVL AWGPSGLAVV DGLSNLLKCR LPATIRCLSH PSAHVRALST SVLRDIMNQS
1101: SIPIKVTPKL PTTEKNGMNS PSYRFFNAAS IDWKADIQNC LNWEAHSLLS TTMPTQFLDT AARELGCTIS LSQ
Arabidopsis Description
GIProtein GIGANTEA [Source:UniProtKB/Swiss-Prot;Acc:Q9SQI2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.