Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Zm00001d039589_P136 | Maize | plasma membrane | 93.99 | 94.23 |
Os01t0182600-03 | Rice | nucleus | 90.1 | 91.81 |
TraesCS3B01G135400.1 | Wheat | cytosol, nucleus, plasma membrane | 86.13 | 88.14 |
TraesCS3D01G118200.2 | Wheat | nucleus | 85.96 | 88.12 |
TraesCS3A01G116300.1 | Wheat | cytosol, nucleus, plasma membrane | 86.04 | 88.05 |
HORVU3Hr1G021150.2 | Barley | cytosol | 18.44 | 87.2 |
HORVU3Hr1G021140.2 | Barley | plastid | 68.19 | 82.5 |
GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome | 42.22 | 80.35 |
GSMUA_Achr7P09770_001 | Banana | cytosol | 73.69 | 76.67 |
GSMUA_Achr10P... | Banana | cytosol | 74.96 | 75.66 |
VIT_18s0157g00020.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 71.74 | 72.48 |
GSMUA_Achr10P... | Banana | cytosol, mitochondrion, nucleus, plastid | 23.94 | 70.75 |
KRH35085 | Soybean | cytosol, nucleus, plasma membrane | 68.44 | 68.73 |
KRG91704 | Soybean | cytosol | 68.19 | 68.42 |
Solyc04g071990.2.1 | Tomato | cytosol | 67.43 | 68.29 |
Bra024536.1-P | Field mustard | cytosol, nucleus, plasma membrane | 67.17 | 67.81 |
KRH08640 | Soybean | cytosol | 62.69 | 67.73 |
CDY21388 | Canola | cytosol, nucleus, plasma membrane | 67.01 | 67.63 |
Solyc12g056650.1.1 | Tomato | nucleus | 66.67 | 67.52 |
CDY04787 | Canola | cytosol, nucleus, plasma membrane | 66.75 | 67.44 |
AT1G22770.1 | Thale cress | cytosol | 66.84 | 67.35 |
PGSC0003DMT400048370 | Potato | nucleus, plasma membrane, plastid | 49.32 | 66.02 |
PGSC0003DMT400002842 | Potato | plastid | 3.3 | 34.82 |
Protein Annotations
EnsemblPlants:Zm00001d008826_P078 | EnsemblPlants:Zm00001d008826_T078 | EnsemblPlantsGene:Zm00001d008826 | EntrezGene:100147733 | GO:GO:0000003 | GO:GO:0007275 |
GO:GO:0008150 | GO:GO:0009628 | GO:GO:0009791 | GO:GO:2000028 | InterPro:GIGANTEA | PANTHER:PTHR36319 |
PRINTS:PR02081 | ProteinID:AQK90772.1 | SEG:seg | UniParc:UPI000842D4BD | UniProt:A0A1D6FFZ6 | MapMan:26.1.2.3.2 |
Description
gigantea1 gigantea1
Coordinates
chr8:-:21787290..21795409
Molecular Weight (calculated)
129486.0 Da
IEP (calculated)
6.714
GRAVY (calculated)
-0.119
Length
1182 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDELIVNFNK FLGQALELPS MSDSNVKWID GLQFTSLYWP PPLDAEQKQA QILAYVEYFG QFTADTDQFP EDIAQLIQSS YPSKENRLVD EVLATFVLHH
0101: PEHGHAVAHP ILSRIIDGTL CYDRHGPPFS SFISLFSHNS EQEYSEQWAL ACGEILRVLT HYNRPIFKVE RQHTEAECSS TSDQATSSDS TDKRSNNSPG
0201: NESDWKPLRP LTPWITDILL AAPLGIRSDY FRWCGGVMGK YAAGGELKPP TTACSRGSGK HPQLMPSTPR WAVANGAGVI LSVCDEEVAR YETANLTAAA
0301: VPALLLPPPT TPLDEHLVAG LPPLEPYARL FHRYYAIATP SATQRLLFGL LEAPPSWAPD ALDAAVQLVE LLRAAEDYAS GMRLPKNWMH LHFLRAIGTA
0401: MSMRAGIAAD TAAALLFRIL SQPTLLFPPL RHAEGVEVHH EPLGGYVSSY KKQLEVPASE ATIDATAQGI ASLLCAHGPD VEWRICTIWE AAYGLLPLSS
0501: SAVDLPEIVV AAPLQPPTLS WSLYLPLLKV FEYLPRGSPS EACLMRIFVA TVEAILRRTF PSETSEQSRK PRSQSKNLAV AELHTMIHSL FVESCASMDL
0601: ASRLLFVVLT VCVSHQALPG GSKRPTGSDN HSHEEATEHS RLTNGRSRCK KRQGPVATFD SYVLAAVCAL SCELQLFPFI TKNGSHSNLK DSMKIIISGK
0701: NNGMNNELHN SISSAILHTR RILGILEAVF SLKPSSVGTS WSYSSNEIVA AAMVAAHVSE LFRRSRPCLN ALSALMRCKW DAEISTRASS LYHLIDLHGK
0801: TVSSIVNKAE PLEAHLTLTP VKRDNQHHRE ESNTSSLDSV KLENKNGSTS HKKNGFSRPL LKCAEEVLLN GDVASTSGKS IASLQVEASD LANFLTMDRN
0901: GGYRGSQTLL RSVLSEKQEL CFSVVSLLWQ KLIASPEMQM SAESTSAHQG WRKVVDALCD VVSASPTKAS AAIVLQAEKD LQPWIARDDE QGQKMWRVNQ
1001: RIVKLIAELM RNHDSPEALV ILASASDLLL RATDGMLVDG EACTLPQLEL LEVTARAVHL IIEWGDSGLS VADGLSNLLK CRLSTTIRCL SHPSAHVRAL
1101: SMSVLRDILS NGSVNPNKTI QGEQQRNGIQ SPSYRCLAAG IINWQADVER CIEWEAHSRR ATGLTLAFLS AAAKELGCPL PS
0101: PEHGHAVAHP ILSRIIDGTL CYDRHGPPFS SFISLFSHNS EQEYSEQWAL ACGEILRVLT HYNRPIFKVE RQHTEAECSS TSDQATSSDS TDKRSNNSPG
0201: NESDWKPLRP LTPWITDILL AAPLGIRSDY FRWCGGVMGK YAAGGELKPP TTACSRGSGK HPQLMPSTPR WAVANGAGVI LSVCDEEVAR YETANLTAAA
0301: VPALLLPPPT TPLDEHLVAG LPPLEPYARL FHRYYAIATP SATQRLLFGL LEAPPSWAPD ALDAAVQLVE LLRAAEDYAS GMRLPKNWMH LHFLRAIGTA
0401: MSMRAGIAAD TAAALLFRIL SQPTLLFPPL RHAEGVEVHH EPLGGYVSSY KKQLEVPASE ATIDATAQGI ASLLCAHGPD VEWRICTIWE AAYGLLPLSS
0501: SAVDLPEIVV AAPLQPPTLS WSLYLPLLKV FEYLPRGSPS EACLMRIFVA TVEAILRRTF PSETSEQSRK PRSQSKNLAV AELHTMIHSL FVESCASMDL
0601: ASRLLFVVLT VCVSHQALPG GSKRPTGSDN HSHEEATEHS RLTNGRSRCK KRQGPVATFD SYVLAAVCAL SCELQLFPFI TKNGSHSNLK DSMKIIISGK
0701: NNGMNNELHN SISSAILHTR RILGILEAVF SLKPSSVGTS WSYSSNEIVA AAMVAAHVSE LFRRSRPCLN ALSALMRCKW DAEISTRASS LYHLIDLHGK
0801: TVSSIVNKAE PLEAHLTLTP VKRDNQHHRE ESNTSSLDSV KLENKNGSTS HKKNGFSRPL LKCAEEVLLN GDVASTSGKS IASLQVEASD LANFLTMDRN
0901: GGYRGSQTLL RSVLSEKQEL CFSVVSLLWQ KLIASPEMQM SAESTSAHQG WRKVVDALCD VVSASPTKAS AAIVLQAEKD LQPWIARDDE QGQKMWRVNQ
1001: RIVKLIAELM RNHDSPEALV ILASASDLLL RATDGMLVDG EACTLPQLEL LEVTARAVHL IIEWGDSGLS VADGLSNLLK CRLSTTIRCL SHPSAHVRAL
1101: SMSVLRDILS NGSVNPNKTI QGEQQRNGIQ SPSYRCLAAG IINWQADVER CIEWEAHSRR ATGLTLAFLS AAAKELGCPL PS
0001: MASSSSSERW IDGLQFSSLL WPPPRDPQQH KDQVVAYVEY FGQFTSEQFP DDIAELVRHQ YPSTEKRLLD DVLAMFVLHH PEHGHAVILP IISCLIDGSL
0101: VYSKEAHPFA SFISLVCPSS ENDYSEQWAL ACGEILRILT HYNRPIYKTE QQNGDTERNC LSKATTSGSP TSEPKAGSPT QHERKPLRPL SPWISDILLA
0201: APLGIRSDYF RWCSGVMGKY AAGELKPPTI ASRGSGKHPQ LMPSTPRWAV ANGAGVILSV CDDEVARYET ATLTAVAVPA LLLPPPTTSL DEHLVAGLPA
0301: LEPYARLFHR YYAIATPSAT QRLLLGLLEA PPSWAPDALD AAVQLVELLR AAEDYASGVR LPRNWMHLHF LRAIGIAMSM RAGVAADAAA ALLFRILSQP
0401: ALLFPPLSQV EGVEIQHAPI GGYSSNYRKQ IEVPAAEATI EATAQGIASM LCAHGPEVEW RICTIWEAAY GLIPLNSSAV DLPEIIVATP LQPPILSWNL
0501: YIPLLKVLEY LPRGSPSEAC LMKIFVATVE TILSRTFPPE SSRELTRKAR SSFTTRSATK NLAMSELRAM VHALFLESCA GVELASRLLF VVLTVCVSHE
0601: AQSSGSKRPR SEYASTTENI EANQPVSNNQ TANRKSRNVK GQGPVAAFDS YVLAAVCALA CEVQLYPMIS GGGNFSNSAV AGTITKPVKI NGSSKEYGAG
0701: IDSAISHTRR ILAILEALFS LKPSSVGTPW SYSSSEIVAA AMVAAHISEL FRRSKALTHA LSGLMRCKWD KEIHKRASSL YNLIDVHSKV VASIVDKAEP
0801: LEAYLKNTPV QKDSVTCLNW KQENTCASTT CFDTAVTSAS RTEMNPRGNH KYARHSDEGS GRPSEKGIKD FLLDASDLAN FLTADRLAGF YCGTQKLLRS
0901: VLAEKPELSF SVVSLLWHKL IAAPEIQPTA ESTSAQQGWR QVVDALCNVV SATPAKAAAA VVLQAERELQ PWIAKDDEEG QKMWKINQRI VKVLVELMRN
1001: HDRPESLVIL ASASDLLLRA TDGMLVDGEA CTLPQLELLE ATARAIQPVL AWGPSGLAVV DGLSNLLKCR LPATIRCLSH PSAHVRALST SVLRDIMNQS
1101: SIPIKVTPKL PTTEKNGMNS PSYRFFNAAS IDWKADIQNC LNWEAHSLLS TTMPTQFLDT AARELGCTIS LSQ
0101: VYSKEAHPFA SFISLVCPSS ENDYSEQWAL ACGEILRILT HYNRPIYKTE QQNGDTERNC LSKATTSGSP TSEPKAGSPT QHERKPLRPL SPWISDILLA
0201: APLGIRSDYF RWCSGVMGKY AAGELKPPTI ASRGSGKHPQ LMPSTPRWAV ANGAGVILSV CDDEVARYET ATLTAVAVPA LLLPPPTTSL DEHLVAGLPA
0301: LEPYARLFHR YYAIATPSAT QRLLLGLLEA PPSWAPDALD AAVQLVELLR AAEDYASGVR LPRNWMHLHF LRAIGIAMSM RAGVAADAAA ALLFRILSQP
0401: ALLFPPLSQV EGVEIQHAPI GGYSSNYRKQ IEVPAAEATI EATAQGIASM LCAHGPEVEW RICTIWEAAY GLIPLNSSAV DLPEIIVATP LQPPILSWNL
0501: YIPLLKVLEY LPRGSPSEAC LMKIFVATVE TILSRTFPPE SSRELTRKAR SSFTTRSATK NLAMSELRAM VHALFLESCA GVELASRLLF VVLTVCVSHE
0601: AQSSGSKRPR SEYASTTENI EANQPVSNNQ TANRKSRNVK GQGPVAAFDS YVLAAVCALA CEVQLYPMIS GGGNFSNSAV AGTITKPVKI NGSSKEYGAG
0701: IDSAISHTRR ILAILEALFS LKPSSVGTPW SYSSSEIVAA AMVAAHISEL FRRSKALTHA LSGLMRCKWD KEIHKRASSL YNLIDVHSKV VASIVDKAEP
0801: LEAYLKNTPV QKDSVTCLNW KQENTCASTT CFDTAVTSAS RTEMNPRGNH KYARHSDEGS GRPSEKGIKD FLLDASDLAN FLTADRLAGF YCGTQKLLRS
0901: VLAEKPELSF SVVSLLWHKL IAAPEIQPTA ESTSAQQGWR QVVDALCNVV SATPAKAAAA VVLQAERELQ PWIAKDDEEG QKMWKINQRI VKVLVELMRN
1001: HDRPESLVIL ASASDLLLRA TDGMLVDGEA CTLPQLELLE ATARAIQPVL AWGPSGLAVV DGLSNLLKCR LPATIRCLSH PSAHVRALST SVLRDIMNQS
1101: SIPIKVTPKL PTTEKNGMNS PSYRFFNAAS IDWKADIQNC LNWEAHSLLS TTMPTQFLDT AARELGCTIS LSQ
Arabidopsis Description
GIProtein GIGANTEA [Source:UniProtKB/Swiss-Prot;Acc:Q9SQI2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.