Factsheet for Zm00001d027846_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d006165_P001
Zm00001d007445_P001
Zm00001d008826_P078
Zm00001d031725_P001
Zm00001d039589_P136
Zm00001d053091_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G47500.1	Zm00001d007445_P001	AT1G68050.1	16002617
AT3G47500.1	Zm00001d053091_P001	AT1G68050.1	16002617
AT5G62430.1	Zm00001d008826_P078	AT1G22770.1	17872410
AT5G62430.1	Zm00001d039589_P136	AT1G22770.1	17872410
AT5G62430.1	Zm00001d007445_P001	AT1G68050.1	16002617
AT5G62430.1	Zm00001d053091_P001	AT1G68050.1	16002617
AT5G62430.1	Zm00001d006165_P001	AT5G51910.1	21798944
AT5G62430.1	Zm00001d031725_P001	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95426	Sorghum	nucleus	84.03	85.61
Os03t0169600-01	Rice	nucleus	71.06	69.77
TraesCS4A01G017700.1	Wheat	nucleus	65.97	65.22
TraesCS4D01G285100.1	Wheat	nucleus	66.67	65.16
HORVU4Hr1G074990.1	Barley	nucleus	66.67	65.16
TraesCS4B01G286400.1	Wheat	nucleus	65.28	65.13
Zm00001d032999_P001	Maize	nucleus	49.54	47.56
Zm00001d014198_P001	Maize	nucleus	42.82	42.63
AT5G62430.1	Thale cress	nucleus	28.01	40.6
CDY69084	Canola	nucleus	25.46	40.15
CDY00286	Canola	nucleus	25.23	39.93
CDY67518	Canola	nucleus	26.85	39.73
CDY69244	Canola	nucleus	26.62	39.38
Bra029261.1-P	Field mustard	nucleus	26.39	39.04
Bra010082.1-P	Field mustard	nucleus	23.15	37.31
VIT_17s0000g06310.t01	Wine grape	nucleus	38.43	35.1
VIT_01s0026g02580.t01	Wine grape	nucleus	37.96	34.38
CDY66672	Canola	nucleus	33.56	33.96
Bra018141.1-P	Field mustard	nucleus	33.56	33.96
CDY47405	Canola	nucleus	33.56	33.8
KRG93541	Soybean	nucleus	30.09	33.77
KRH03487	Soybean	nucleus	36.81	33.76
KRH56903	Soybean	nucleus	36.81	33.62
AT3G47500.1	Thale cress	nucleus	34.72	33.48
KRH18471	Soybean	nucleus	37.5	33.2
KRH63324	Soybean	nucleus	34.95	32.13
KRH54567	Soybean	nucleus	34.03	32.1
Solyc03g115940.2.1	Tomato	nucleus	36.81	31.74
PGSC0003DMT400050273	Potato	nucleus	36.57	31.41
Zm00001d012703_P001	Maize	nucleus	15.28	29.6
PGSC0003DMT400083080	Potato	nucleus	33.56	29.47
Solyc06g069760.2.1	Tomato	nucleus	33.33	29.27
Zm00001d022525_P001	Maize	nucleus	32.87	27.57
Zm00001d010740_P001	Maize	nucleus	13.43	27.36
Zm00001d040362_P001	Maize	nucleus	36.11	27.27
Zm00001d038693_P001	Maize	nucleus	14.58	27.27
Zm00001d040455_P001	Maize	nucleus	31.71	26.71
Zm00001d026628_P001	Maize	nucleus, plastid	12.04	24.64
Zm00001d043402_P001	Maize	nucleus	14.81	24.62
Zm00001d001824_P001	Maize	nucleus	11.34	24.02
Zm00001d039482_P001	Maize	nucleus	12.04	22.51
Zm00001d031278_P001	Maize	nucleus	12.5	22.5
Zm00001d020837_P001	Maize	nucleus	13.43	21.89
Zm00001d005970_P001	Maize	nucleus	12.27	21.72
Zm00001d033325_P001	Maize	nucleus, plastid	15.28	21.02
Zm00001d043904_P001	Maize	nucleus	10.88	20.52
Zm00001d013724_P001	Maize	nucleus	14.81	19.1
Zm00001d024790_P001	Maize	nucleus	10.65	18.78

Protein Annotations

MapMan:15.5.1.5	UniProt:B4FDH4	EMBL:BT035162	EMBL:BT067316	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003851	ProteinID:ONL94094.1	PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884
PANTHER:PTHR31089	PANTHER:PTHR31089:SF3	UniParc:UPI00017B6809	EnsemblPlantsGene:Zm00001d027846	EnsemblPlants:Zm00001d027846_P001	EnsemblPlants:Zm00001d027846_T001
InterPro:Znf_Dof	SEG:seg	:	:	:	:

Description

C2C2-Dof-transcription factor 21Dof-type zinc finger DNA-binding family protein

Coordinates

chr1:+:15060190..15063033

Molecular Weight (calculated)

45299.1 Da

IEP (calculated)

8.536

GRAVY (calculated)

-0.540

Length

432 amino acids

Sequence
(BLAST)

001: MGEGRAGDGL IKLFGKTIPV PETAAVGEAA KDMQQSGGSG SGTTDPKGQE NNVQDSTGSP PQQEVADTED SSADKQQGEA GNPKEKLKKP DKILPCPRCN
101: SMDTKFCYYN NYNINQPRHF CKNCQRYWTA GGAMRNVPVG AGRRKSKSAS ATSHFLQRVR AGLPVDPLVC AAAKTNGTVL SFGSAMSSLD LTEQMKQLKE
201: KLVPIAGDER SVGSRTQGPS AKAEDPDRKE NVTADKSARV VQHPCMTNGV AMWPFSCAPP VPASACYGPG SIAIPFYPAA AAAAAYWGCM VPGAWSGAWP
301: PHSGQSETGS SITSASPAAS TKSNICFTPG KHPRDRDEEG GAKGNGKVWV PKTIRIDDVD EVARSSILSL IGIGGDKAGK DGGRGCKLAR VFEQNEEAAR
401: TATPHSAAIS GLPFLQGNPA ALSRSLTFQE GS

Best Arabidopsis Sequence Match ( AT3G47500.1 )
(BLAST)

001: MMMETRDPAI KLFGMKIPFP SVFESAVTVE DDEEDDWSGG DDKSPEKVTP ELSDKNNNNC NDNSFNNSKP ETLDKEEATS TDQIESSDTP EDNQQTTPDG
101: KTLKKPTKIL PCPRCKSMET KFCYYNNYNI NQPRHFCKAC QRYWTAGGTM RNVPVGAGRR KNKSSSSHYR HITISEALEA ARLDPGLQAN TRVLSFGLEA
201: QQQHVAAPMT PVMKLQEDQK VSNGARNRFH GLADQRLVAR VENGDDCSSG SSVTTSNNHS VDESRAQSGS VVEAQMNNNN NNNMNGYACI PGVPWPYTWN
301: PAMPPPGFYP PPGYPMPFYP YWTIPMLPPH QSSSPISQKC SNTNSPTLGK HPRDEGSSKK DNETERKQKA GCVLVPKTLR IDDPNEAAKS SIWTTLGIKN
401: EAMCKAGGMF KGFDHKTKMY NNDKAENSPV LSANPAALSR SHNFHEQI

Arabidopsis Description

CDF3Cyclic dof factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8LFV3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.