Factsheet for Zm00001d031278_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 9477573

gfp PMID: 9477573 doi

S Yanagisawa, J Sheen

Department of Life Sciences (Chemistry), Graduate School of Arts and Sciences, University of Tokyo, Japan. csyanag@komaba.ecc.u-tokyo.ac.jp

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU81009	Sorghum	nucleus	82.08	74.34
Os08t0490100-01	Rice	nucleus	63.75	55.43
Zm00001d005970_P001	Maize	nucleus	45.0	44.26
Zm00001d020837_P001	Maize	nucleus	46.67	42.26
Zm00001d024790_P001	Maize	nucleus	27.92	27.35
Zm00001d013724_P001	Maize	nucleus	32.08	22.99
Zm00001d033325_P001	Maize	nucleus, plastid	30.0	22.93
Zm00001d039482_P001	Maize	nucleus	21.67	22.51
Zm00001d012703_P001	Maize	nucleus	19.58	21.08
Zm00001d026628_P001	Maize	nucleus, plastid	18.33	20.85
Zm00001d001824_P001	Maize	nucleus	17.08	20.1
Zm00001d010740_P001	Maize	nucleus	17.5	19.81
Zm00001d038693_P001	Maize	nucleus	17.5	18.18
Zm00001d043402_P001	Maize	nucleus	18.75	17.31
Zm00001d043904_P001	Maize	nucleus	15.83	16.59
Zm00001d032999_P001	Maize	nucleus	25.0	13.33
Zm00001d014198_P001	Maize	nucleus	23.33	12.9
Zm00001d027846_P001	Maize	nucleus	22.5	12.5
Zm00001d022525_P001	Maize	nucleus	24.17	11.26
Zm00001d040362_P001	Maize	nucleus	25.83	10.84
Zm00001d040455_P001	Maize	nucleus	21.25	9.94

Protein Annotations

EntrezGene:100283759	MapMan:15.5.1.5	UniProt:B6TLJ4	EMBL:EU965859	EMBL:EU969388	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0044212	GO:GO:0046872
InterPro:IPR003851	ProteinID:ONM02617.1	PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884
PANTHER:PTHR31992	PANTHER:PTHR31992:SF68	UniParc:UPI0001608AF7	EnsemblPlantsGene:Zm00001d031278	EnsemblPlants:Zm00001d031278_P001	EnsemblPlants:Zm00001d031278_T001
InterPro:Znf_Dof	SEG:seg	:	:	:	:

Description

Dof zinc finger protein DOF1.6

Coordinates

chr1:+:184859499..184860221

Molecular Weight (calculated)

25070.1 Da

IEP (calculated)

7.730

GRAVY (calculated)

-0.495

Length

240 amino acids

Sequence
(BLAST)

001: MQEASSAAAG AEPGRRAAQH QFAGVDLRRP KGYAPPAPAV SEGDPCPRCA SRDTKFCYYN NYNTSQPRHF CKGCRRYWTK GGTLRNVPVG GGTRKKPSLS
101: SSSSSSYAAA ADADRQPKKK PASKKRRVVA PAPELAAAAD PGKTAPTTTT TTTTTSEITT ETGALEDSDS LAHLLLQPGT EDAEAVALGL GLSDFPSAGK
201: AVLDDEDSFV WPAASFDMGA CWAGAGFADP DPACIFLNLP

Best Arabidopsis Sequence Match ( AT3G50410.1 )
(BLAST)

001: MPTSDSGEPR RIAMKPNGVT VPISDQQEQL PCPRCDSSNT KFCYYNNYNF SQPRHFCKAC RRYWTHGGTL RDVPVGGGTR KSAKRSRTCS NSSSSSVSGV
101: VSNSNGVPLQ TTPVLFPQSS ISNGVTHTVT ESDGKGSALS LCGSFTSTLL NHNAAATATH GSGSVIGIGG FGIGLGSGFD DVSFGLGRAM WPFSTVGTAT
201: TTNVGSNGGH HAVPMPATWQ FEGLESNAGG GFVSGEYFAW PDLSITTPGN SLK

Arabidopsis Description

DOF3.4OBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178VFT5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.