Factsheet for Zm00001d022525_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d006165_P001
Zm00001d007445_P001
Zm00001d008826_P078
Zm00001d031725_P001
Zm00001d039589_P136
Zm00001d053091_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G47500.1	Zm00001d007445_P001	AT1G68050.1	16002617
AT3G47500.1	Zm00001d053091_P001	AT1G68050.1	16002617
AT5G62430.1	Zm00001d008826_P078	AT1G22770.1	17872410
AT5G62430.1	Zm00001d039589_P136	AT1G22770.1	17872410
AT5G62430.1	Zm00001d007445_P001	AT1G68050.1	16002617
AT5G62430.1	Zm00001d053091_P001	AT1G68050.1	16002617
AT5G62430.1	Zm00001d006165_P001	AT5G51910.1	21798944
AT5G62430.1	Zm00001d031725_P001	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU90492	Sorghum	nucleus	80.78	85.95
Os07t0685000-02	Rice	nucleus	65.63	71.01
TraesCS2A01G100800.1	Wheat	nucleus	63.11	67.85
HORVU2Hr1G017290.1	Barley	nucleus	62.52	67.79
TraesCS2B01G118000.1	Wheat	nucleus	62.91	67.64
TraesCS2D01G100300.1	Wheat	mitochondrion, nucleus	63.5	65.27
CDY67518	Canola	nucleus	24.66	43.49
AT5G62430.1	Thale cress	nucleus	25.05	43.29
CDY69244	Canola	nucleus	24.47	43.15
CDY00286	Canola	nucleus	22.52	42.49
Bra029261.1-P	Field mustard	nucleus	24.08	42.47
CDY69084	Canola	nucleus	22.52	42.34
Bra010082.1-P	Field mustard	nucleus	21.94	42.16
VIT_17s0000g06310.t01	Wine grape	nucleus	35.92	39.11
CDY66672	Canola	nucleus	32.04	38.64
Bra018141.1-P	Field mustard	nucleus	32.04	38.64
CDY47405	Canola	nucleus	31.84	38.23
KRH03487	Soybean	nucleus	33.98	37.16
AT3G47500.1	Thale cress	nucleus	32.04	36.83
KRH56903	Soybean	nucleus	33.59	36.58
KRH54567	Soybean	nucleus	31.65	35.59
VIT_01s0026g02580.t01	Wine grape	nucleus	32.43	35.01
KRH63324	Soybean	nucleus	31.84	34.89
KRH18471	Soybean	nucleus	32.62	34.43
PGSC0003DMT400050273	Potato	nucleus	33.2	34.0
Zm00001d040362_P001	Maize	nucleus	37.67	33.92
Solyc03g115940.2.1	Tomato	nucleus	32.82	33.73
Solyc06g069760.2.1	Tomato	nucleus	31.84	33.33
PGSC0003DMT400083080	Potato	nucleus	31.65	33.13
Zm00001d027846_P001	Maize	nucleus	27.57	32.87
KRG93541	Soybean	nucleus	23.5	31.43
Zm00001d040455_P001	Maize	nucleus	31.07	31.19
Zm00001d032999_P001	Maize	nucleus	26.99	30.89
Zm00001d014198_P001	Maize	nucleus	25.63	30.41
Zm00001d012703_P001	Maize	nucleus	12.43	28.7
Zm00001d005970_P001	Maize	nucleus	12.82	27.05
Zm00001d026628_P001	Maize	nucleus, plastid	10.29	25.12
Zm00001d038693_P001	Maize	nucleus	11.26	25.11
Zm00001d043402_P001	Maize	nucleus	12.62	25.0
Zm00001d020837_P001	Maize	nucleus	12.62	24.53
Zm00001d031278_P001	Maize	nucleus	11.26	24.17
Zm00001d010740_P001	Maize	nucleus	9.71	23.58
Zm00001d039482_P001	Maize	nucleus	10.29	22.94
Zm00001d001824_P001	Maize	nucleus	8.93	22.55
Zm00001d043904_P001	Maize	nucleus	7.96	17.9
Zm00001d033325_P001	Maize	nucleus, plastid	10.49	17.2
Zm00001d024790_P001	Maize	nucleus	7.96	16.73
Zm00001d013724_P001	Maize	nucleus	10.29	15.82

Protein Annotations

MapMan:15.5.1.5	UniProt:F1DJS2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EMBL:HQ858680	InterPro:IPR003851
ProteinID:ONM60910.1	PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884	PANTHER:PTHR31089
PANTHER:PTHR31089:SF6	UniParc:UPI000160964D	EnsemblPlantsGene:Zm00001d022525	EnsemblPlants:Zm00001d022525_P001	EnsemblPlants:Zm00001d022525_T001	InterPro:Znf_Dof
SEG:seg	:	:	:	:	:

Description

C2C2-Dof-transcription factor 1Dof-type zinc finger DNA-binding family protein

Coordinates

chr7:-:179337787..179341946

Molecular Weight (calculated)

53893.8 Da

IEP (calculated)

7.191

GRAVY (calculated)

-0.536

Length

515 amino acids

Sequence
(BLAST)

001: MELAGAASPH PPPESHVAPP RPPPQPPEED LCEDRGDMSV TGEKPCTHRE SDVGQTNSCS LNNSSECENH TPSNDEISEP ESNLEMAKTD QGGDVPSGEK
101: VLKKPDKILP CPRCNSMDTK FCYYNNYNIK QPRHFCKSCQ RYWTAGGSMR NIPVGAGRRK SKSSSASCRS VLIPVPGSSS VANPGGEASL FPLSVKANQA
201: AVSFGPDSPL CTSMASVLKI GGGGEQVKSC SPASAAAQPR NGETQTQTCA PSSAATTPSD GPGNGLQKGA ESAHQNQNQN QNGIIGHSNG VTPVHPIPFF
301: PGPPFVYPWS PAWNGIPAMA AAVCAAPATA EAAISSEHGT ASSTVQWNVP PAIVPVLPPG FCGPIPVPVI PPPSVWPLIT PWPNAAWSAP WLGPSASVPP
401: GSSRSSGSST CSDSGCGSGS PVLGKHSRES RPQGDEKAER RCLWIPKTLR IDDPVEAAKS SIWTTLGIEP GDRGMFRPFQ SKHGRQQELQ ASGAARALQA
501: NPAALSRSQS FQETT

Best Arabidopsis Sequence Match ( AT5G39660.3 )
(BLAST)

001: MADPAIKLFG KTIPLPELGV VDSSSSYTGF LTETQIPVRL SDSCTGDDDD EEMGDSGLGR EEGDDVGDGG GESETDKKEE KDSECQEESL RNESNDVTTT
101: TSGITEKTET TKAAKTNEES GGTACSQEGK LKKPDKILPC PRCNSMETKF CYYNNYNVNQ PRHFCKKCQR YWTAGGTMRN VPVGAGRRKN KSPASHYNRH
201: VSITSAEAMQ KVARTDLQHP NGANLLTFGS DSVLCESMAS GLNLVEKSLL KTQTVLQEPN EGLKITVPLN QTNEEAGTVS PLPKVPCFPG PPPTWPYAWN
301: GVSWTILPFY PPPAYWSCPG VSPGAWNSFT WMPQPNSPSG SNPNSPTLGK HSRDENAAEP GTAFDETESL GREKSKPERC LWVPKTLRID DPEEAAKSSI
401: WETLGIKKDE NADTFGAFRS STKEKSSLSE GRLPGRRPEL QANPAALSRS ANFHESS

Arabidopsis Description

CDF2Cyclic dof factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZL5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.