Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 4
- golgi 3
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG31676 | Sorghum | nucleus | 94.66 | 96.04 |
| Zm00001d008826_P078 | Maize | nucleus | 94.23 | 93.99 |
| Os01t0182600-03 | Rice | nucleus | 88.97 | 90.43 |
| TraesCS3D01G118200.2 | Wheat | nucleus | 85.5 | 87.42 |
| TraesCS3B01G135400.1 | Wheat | cytosol, nucleus, plasma membrane | 85.58 | 87.36 |
| TraesCS3A01G116300.1 | Wheat | cytosol, nucleus, plasma membrane | 85.5 | 87.27 |
| HORVU3Hr1G021150.2 | Barley | cytosol | 18.15 | 85.6 |
| HORVU3Hr1G021140.2 | Barley | plastid | 67.43 | 81.37 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome | 41.98 | 79.71 |
| GSMUA_Achr7P09770_001 | Banana | cytosol | 73.54 | 76.32 |
| GSMUA_Achr10P... | Banana | cytosol | 73.96 | 74.47 |
| VIT_18s0157g00020.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 71.67 | 72.22 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion, nucleus, plastid | 23.49 | 69.25 |
| KRH35085 | Soybean | cytosol, nucleus, plasma membrane | 68.96 | 69.07 |
| KRG91704 | Soybean | cytosol | 68.7 | 68.76 |
| KRH08640 | Soybean | cytosol | 62.85 | 67.73 |
| Bra024536.1-P | Field mustard | cytosol, nucleus, plasma membrane | 67.18 | 67.63 |
| Solyc04g071990.2.1 | Tomato | cytosol | 66.92 | 67.61 |
| CDY21388 | Canola | cytosol, nucleus, plasma membrane | 67.01 | 67.46 |
| Solyc12g056650.1.1 | Tomato | nucleus | 66.75 | 67.44 |
| CDY04787 | Canola | cytosol, nucleus, plasma membrane | 66.92 | 67.44 |
| AT1G22770.1 | Thale cress | cytosol | 67.01 | 67.35 |
| PGSC0003DMT400048370 | Potato | nucleus, plasma membrane, plastid | 49.45 | 66.02 |
| PGSC0003DMT400002842 | Potato | plastid | 3.22 | 33.93 |
Protein Annotations
| EnsemblPlants:Zm00001d039589_P136 | EnsemblPlants:Zm00001d039589_T136 | EnsemblPlantsGene:Zm00001d039589 | EntrezGene:100272803 | GO:GO:0000003 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0009628 | GO:GO:0009791 | GO:GO:2000028 | InterPro:GIGANTEA | PANTHER:PTHR36319 |
| PRINTS:PR02081 | ProteinID:ONM29328.1 | SEG:seg | UniParc:UPI0008434EC3 | UniProt:A0A1D6MJ48 | MapMan:26.1.2.3.2 |
Description
gigantea2 gigantea2
Coordinates
chr3:+:8523695..8533226
Molecular Weight (calculated)
129110.0 Da
IEP (calculated)
6.905
GRAVY (calculated)
-0.111
Length
1179 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGSMCNFFLS VWQALELPSM SESNVKWIDG LHFTSLYWPP PQDVEQKQAQ ILAYVEYFGQ FTADSEQFPE DVAQLIQSSY PSKESRLIDE VLATFVLHHP
0101: EHGHAVVHPI LSPIIDGTLC YDRHGPPFSS FISLFSHTSE QEYSEQWALA CGEILRVLTH YNRPIFKVER QHSEAECSTT SDQATSSDST DKKSNNSLGN
0201: ESDRKPLRPL TPWITDILLA APLGIRSDYF RWCSGVMGKY AAGGELKPPT TAYSRGSGKH PQLMPSTPRW AVANGAGVIL SVCDEEVARY ETANLTAAAV
0301: PALLLPPPTT PLDEHLVAGL PPLEPYARLF HRYYAIATPS ATQRLLFGLL EAPPSWAPDA LDAAVQLVEL LRAAEDYASG MRLPKNWMHL HFLRAIGTAM
0401: SMRAGIAADT AAALLFRILS QPTLLFPPLR HAEGVDVHHE PLGGYVSSYK KQLEVPASEA TIDATAQGIA SLLCAHGPDV EWRICTIWEA AYGLLPLSSS
0501: AVDLPEIVVA APLQPPTLSW NLYLPLLKVF EYLPRGSPSE ACLMRIFVAT VEAILRRAFP SETPEQSRKP RSQSKNLAVA ELHTMIHSLF VESCASMDLA
0601: SRLLFVVLTV CVSHQALPGG SKRPTGSDNH SLEEATEHSR LTNGRSRCKK RQGPVATFDS YVLAAVCALS CELQLFPCIS KNGSHSNLKD SMKIIIPGKN
0701: NGINNELHSS ISSAIIHTRR ILAILEALFS LKPSSVGTSW SYSSNEIVAA AMVAAHVSEL FRRSRPCLNS LSALMRCKRD AEISTRASSL YHLIDLHGKT
0801: VSSIVNKAEP LEAHLTLTPV KKVNQHRCEE NNTNSSDSAK LENKNGSTHK KNGFSKPHLK CAEEVLNGNV ASTSGKSIAS LQVEASDLAN FLTMDRNGGY
0901: RGSQTLLRSV LSEKQELCFS VVSLLWQKLI ASPEMQMSAE STSAHQGWRK VVDALCDVVS ASPTKASAAI VLQAEKDLQP WIARDDEQGQ KMWRVNQRIV
1001: KLIAELMRNH DSPETLVILA SASDLLLRAT DGILVDGEAC TLPQLELLEV TARAVHLIIE WGDPGLSVAD GLSNLLKCRL STTIRCLSHP SAHVRALSMS
1101: VLRDILDHGS VSPNKISRGE QQRNGIQSPS YRCVAAGILN WQADVERCIE WEAHSRRATG LTLAFLSTAA KELGCPLPC
0101: EHGHAVVHPI LSPIIDGTLC YDRHGPPFSS FISLFSHTSE QEYSEQWALA CGEILRVLTH YNRPIFKVER QHSEAECSTT SDQATSSDST DKKSNNSLGN
0201: ESDRKPLRPL TPWITDILLA APLGIRSDYF RWCSGVMGKY AAGGELKPPT TAYSRGSGKH PQLMPSTPRW AVANGAGVIL SVCDEEVARY ETANLTAAAV
0301: PALLLPPPTT PLDEHLVAGL PPLEPYARLF HRYYAIATPS ATQRLLFGLL EAPPSWAPDA LDAAVQLVEL LRAAEDYASG MRLPKNWMHL HFLRAIGTAM
0401: SMRAGIAADT AAALLFRILS QPTLLFPPLR HAEGVDVHHE PLGGYVSSYK KQLEVPASEA TIDATAQGIA SLLCAHGPDV EWRICTIWEA AYGLLPLSSS
0501: AVDLPEIVVA APLQPPTLSW NLYLPLLKVF EYLPRGSPSE ACLMRIFVAT VEAILRRAFP SETPEQSRKP RSQSKNLAVA ELHTMIHSLF VESCASMDLA
0601: SRLLFVVLTV CVSHQALPGG SKRPTGSDNH SLEEATEHSR LTNGRSRCKK RQGPVATFDS YVLAAVCALS CELQLFPCIS KNGSHSNLKD SMKIIIPGKN
0701: NGINNELHSS ISSAIIHTRR ILAILEALFS LKPSSVGTSW SYSSNEIVAA AMVAAHVSEL FRRSRPCLNS LSALMRCKRD AEISTRASSL YHLIDLHGKT
0801: VSSIVNKAEP LEAHLTLTPV KKVNQHRCEE NNTNSSDSAK LENKNGSTHK KNGFSKPHLK CAEEVLNGNV ASTSGKSIAS LQVEASDLAN FLTMDRNGGY
0901: RGSQTLLRSV LSEKQELCFS VVSLLWQKLI ASPEMQMSAE STSAHQGWRK VVDALCDVVS ASPTKASAAI VLQAEKDLQP WIARDDEQGQ KMWRVNQRIV
1001: KLIAELMRNH DSPETLVILA SASDLLLRAT DGILVDGEAC TLPQLELLEV TARAVHLIIE WGDPGLSVAD GLSNLLKCRL STTIRCLSHP SAHVRALSMS
1101: VLRDILDHGS VSPNKISRGE QQRNGIQSPS YRCVAAGILN WQADVERCIE WEAHSRRATG LTLAFLSTAA KELGCPLPC
0001: MASSSSSERW IDGLQFSSLL WPPPRDPQQH KDQVVAYVEY FGQFTSEQFP DDIAELVRHQ YPSTEKRLLD DVLAMFVLHH PEHGHAVILP IISCLIDGSL
0101: VYSKEAHPFA SFISLVCPSS ENDYSEQWAL ACGEILRILT HYNRPIYKTE QQNGDTERNC LSKATTSGSP TSEPKAGSPT QHERKPLRPL SPWISDILLA
0201: APLGIRSDYF RWCSGVMGKY AAGELKPPTI ASRGSGKHPQ LMPSTPRWAV ANGAGVILSV CDDEVARYET ATLTAVAVPA LLLPPPTTSL DEHLVAGLPA
0301: LEPYARLFHR YYAIATPSAT QRLLLGLLEA PPSWAPDALD AAVQLVELLR AAEDYASGVR LPRNWMHLHF LRAIGIAMSM RAGVAADAAA ALLFRILSQP
0401: ALLFPPLSQV EGVEIQHAPI GGYSSNYRKQ IEVPAAEATI EATAQGIASM LCAHGPEVEW RICTIWEAAY GLIPLNSSAV DLPEIIVATP LQPPILSWNL
0501: YIPLLKVLEY LPRGSPSEAC LMKIFVATVE TILSRTFPPE SSRELTRKAR SSFTTRSATK NLAMSELRAM VHALFLESCA GVELASRLLF VVLTVCVSHE
0601: AQSSGSKRPR SEYASTTENI EANQPVSNNQ TANRKSRNVK GQGPVAAFDS YVLAAVCALA CEVQLYPMIS GGGNFSNSAV AGTITKPVKI NGSSKEYGAG
0701: IDSAISHTRR ILAILEALFS LKPSSVGTPW SYSSSEIVAA AMVAAHISEL FRRSKALTHA LSGLMRCKWD KEIHKRASSL YNLIDVHSKV VASIVDKAEP
0801: LEAYLKNTPV QKDSVTCLNW KQENTCASTT CFDTAVTSAS RTEMNPRGNH KYARHSDEGS GRPSEKGIKD FLLDASDLAN FLTADRLAGF YCGTQKLLRS
0901: VLAEKPELSF SVVSLLWHKL IAAPEIQPTA ESTSAQQGWR QVVDALCNVV SATPAKAAAA VVLQAERELQ PWIAKDDEEG QKMWKINQRI VKVLVELMRN
1001: HDRPESLVIL ASASDLLLRA TDGMLVDGEA CTLPQLELLE ATARAIQPVL AWGPSGLAVV DGLSNLLKCR LPATIRCLSH PSAHVRALST SVLRDIMNQS
1101: SIPIKVTPKL PTTEKNGMNS PSYRFFNAAS IDWKADIQNC LNWEAHSLLS TTMPTQFLDT AARELGCTIS LSQ
0101: VYSKEAHPFA SFISLVCPSS ENDYSEQWAL ACGEILRILT HYNRPIYKTE QQNGDTERNC LSKATTSGSP TSEPKAGSPT QHERKPLRPL SPWISDILLA
0201: APLGIRSDYF RWCSGVMGKY AAGELKPPTI ASRGSGKHPQ LMPSTPRWAV ANGAGVILSV CDDEVARYET ATLTAVAVPA LLLPPPTTSL DEHLVAGLPA
0301: LEPYARLFHR YYAIATPSAT QRLLLGLLEA PPSWAPDALD AAVQLVELLR AAEDYASGVR LPRNWMHLHF LRAIGIAMSM RAGVAADAAA ALLFRILSQP
0401: ALLFPPLSQV EGVEIQHAPI GGYSSNYRKQ IEVPAAEATI EATAQGIASM LCAHGPEVEW RICTIWEAAY GLIPLNSSAV DLPEIIVATP LQPPILSWNL
0501: YIPLLKVLEY LPRGSPSEAC LMKIFVATVE TILSRTFPPE SSRELTRKAR SSFTTRSATK NLAMSELRAM VHALFLESCA GVELASRLLF VVLTVCVSHE
0601: AQSSGSKRPR SEYASTTENI EANQPVSNNQ TANRKSRNVK GQGPVAAFDS YVLAAVCALA CEVQLYPMIS GGGNFSNSAV AGTITKPVKI NGSSKEYGAG
0701: IDSAISHTRR ILAILEALFS LKPSSVGTPW SYSSSEIVAA AMVAAHISEL FRRSKALTHA LSGLMRCKWD KEIHKRASSL YNLIDVHSKV VASIVDKAEP
0801: LEAYLKNTPV QKDSVTCLNW KQENTCASTT CFDTAVTSAS RTEMNPRGNH KYARHSDEGS GRPSEKGIKD FLLDASDLAN FLTADRLAGF YCGTQKLLRS
0901: VLAEKPELSF SVVSLLWHKL IAAPEIQPTA ESTSAQQGWR QVVDALCNVV SATPAKAAAA VVLQAERELQ PWIAKDDEEG QKMWKINQRI VKVLVELMRN
1001: HDRPESLVIL ASASDLLLRA TDGMLVDGEA CTLPQLELLE ATARAIQPVL AWGPSGLAVV DGLSNLLKCR LPATIRCLSH PSAHVRALST SVLRDIMNQS
1101: SIPIKVTPKL PTTEKNGMNS PSYRFFNAAS IDWKADIQNC LNWEAHSLLS TTMPTQFLDT AARELGCTIS LSQ
Arabidopsis Description
GIProtein GIGANTEA [Source:UniProtKB/Swiss-Prot;Acc:Q9SQI2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.