Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU2Hr1G017290.1 | |
| HORVU4Hr1G074990.1 | |
| HORVU6Hr1G019280.3 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G22770.1 | HORVU6Hr1G019280.3 | AT3G11540.1 | 15155885 |
| AT1G22770.1 | HORVU2Hr1G017290.1 | AT5G62430.1 | 17872410 |
| AT1G22770.1 | HORVU4Hr1G074990.1 | AT5G62430.1 | 17872410 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome | 50.77 | 79.87 |
| TraesCS3B01G135400.1 | Wheat | cytosol, nucleus, plasma membrane | 91.61 | 77.49 |
| TraesCS3D01G118200.2 | Wheat | nucleus | 91.4 | 77.45 |
| TraesCS3A01G116300.1 | Wheat | cytosol, nucleus, plasma membrane | 91.3 | 77.23 |
| Os01t0182600-03 | Rice | nucleus | 82.6 | 69.57 |
| KXG31676 | Sorghum | nucleus | 81.58 | 68.59 |
| Zm00001d008826_P078 | Maize | nucleus | 82.5 | 68.19 |
| Zm00001d039589_P136 | Maize | plasma membrane | 81.37 | 67.43 |
| GSMUA_Achr7P09770_001 | Banana | cytosol | 68.78 | 59.15 |
| GSMUA_Achr10P... | Banana | cytosol | 69.09 | 57.64 |
| VIT_18s0157g00020.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 67.45 | 56.32 |
| KRH08640 | Soybean | cytosol | 62.54 | 55.85 |
| Solyc04g071990.2.1 | Tomato | cytosol | 65.1 | 54.5 |
| KRH35085 | Soybean | cytosol, nucleus, plasma membrane | 64.07 | 53.19 |
| KRG91704 | Soybean | cytosol | 63.87 | 52.97 |
| Solyc12g056650.1.1 | Tomato | nucleus | 63.25 | 52.96 |
| Bra024536.1-P | Field mustard | cytosol, nucleus, plasma membrane | 62.44 | 52.09 |
| AT1G22770.1 | Thale cress | cytosol | 62.54 | 52.09 |
| CDY04787 | Canola | cytosol, nucleus, plasma membrane | 62.33 | 52.05 |
| CDY21388 | Canola | cytosol, nucleus, plasma membrane | 62.33 | 52.01 |
| PGSC0003DMT400048370 | Potato | nucleus, plasma membrane, plastid | 41.97 | 46.43 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion, nucleus, plastid | 9.72 | 23.75 |
| PGSC0003DMT400002842 | Potato | plastid | 0.92 | 8.04 |
| HORVU3Hr1G021150.2 | Barley | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G021140.2 | EnsemblPlantsGene:HORVU3Hr1G021140 | GO:GO:0000003 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009628 |
| GO:GO:0009791 | GO:GO:2000028 | InterPro:GIGANTEA | PANTHER:PTHR36319 | PRINTS:PR02081 | SEG:seg |
| UniParc:UPI000B46467E | UniProt:A0A287KDG0 | MapMan:26.1.2.3.2 | : | : | : |
Description
No Description!
Coordinates
chrchr3H:-:67421735..67429949
Molecular Weight (calculated)
106519.0 Da
IEP (calculated)
7.913
GRAVY (calculated)
-0.164
Length
977 amino acids
Sequence
(BLAST)
(BLAST)
001: AYPSHYGKNL FLASPRPSHF SLSSSSSSLP SPLPQPRPPR NPVAGAADSP PELRIGALPT EFLEQALKLP SMSASNGKWI DGLQFSSLFW PPPHDAQQKQ
101: AQILAYVEYF GQFTSDSEQF PEDVAQLIQT CYPSKEKRLV DEVLATFVLH HPEHGHAVVH PILSRIIDGT LSYDSHGSPF NSFISLFTQS SEKEYSEQWA
201: LACGEILRVL THYNRPIFKV ADCNNTSDQA TTSCSAQEKA NYSPGNEPER KPLRPLSPWI TDILLTAPLG IRSDYFRWCG GVMGKYAAGG ELKPPTTAYS
301: RGAGKHPQLM PSTPRWAVAN GAGVILSVCD EEVARYETAN LTAAAVPALL LPPPTTPLDE HLVAGLPPLE PYARLFHRYY AIATPSATQR LLFGLLEAPP
401: SWAPDALDAA VQLVELLRAA EDYATGMRLP KNWLHLHFLR AIGTAMSMRA GIAADTAAAL LFRILSQPTL LFPPLRHAEG VEVQHEPLGG YVSSYKRQLE
501: VPASETTIDA TAQGIASLLC AHGPDVEWRI CTIWEAAYGL LPLNSSAVDL PEIVVAAPLQ PPTLSWSLYL PLLKVFEYLP RGSPSEACLM RIFVATVEAI
601: LRRTFPSETS ESSKRPRSQS KNLAVAELRT MIHSLFVESC ASMNLASRLL FVVLTVCVSH QALPGGSKRP TGSENHSSEE ATEDPRLTNG RNKVKKKQGP
701: VGTFDSYVLA AVCALSCELQ LFPILCKSAT NSKVKDSIKI LKPGKNNGIS NELQNSISSA ILHTRRILGI LEALFSLKPS SVGTSWNYSS NEIVAAAMVA
801: AHVSELFRRS RPCLNALSSL KRCKWDAEIS TRASSLYHLI DLHGKTVSSI VNKAEPLEAH LTFTSVKRDG QQHIEENSTS SSGNGNLEKK NASASHMKNG
901: FSRPLLKCSE EARRNGNVAS TSGKVPATLQ AEASDLANFL TMDRNGGYRG SQTLLSSVIS EKQELCFSVV SLLWHKL
101: AQILAYVEYF GQFTSDSEQF PEDVAQLIQT CYPSKEKRLV DEVLATFVLH HPEHGHAVVH PILSRIIDGT LSYDSHGSPF NSFISLFTQS SEKEYSEQWA
201: LACGEILRVL THYNRPIFKV ADCNNTSDQA TTSCSAQEKA NYSPGNEPER KPLRPLSPWI TDILLTAPLG IRSDYFRWCG GVMGKYAAGG ELKPPTTAYS
301: RGAGKHPQLM PSTPRWAVAN GAGVILSVCD EEVARYETAN LTAAAVPALL LPPPTTPLDE HLVAGLPPLE PYARLFHRYY AIATPSATQR LLFGLLEAPP
401: SWAPDALDAA VQLVELLRAA EDYATGMRLP KNWLHLHFLR AIGTAMSMRA GIAADTAAAL LFRILSQPTL LFPPLRHAEG VEVQHEPLGG YVSSYKRQLE
501: VPASETTIDA TAQGIASLLC AHGPDVEWRI CTIWEAAYGL LPLNSSAVDL PEIVVAAPLQ PPTLSWSLYL PLLKVFEYLP RGSPSEACLM RIFVATVEAI
601: LRRTFPSETS ESSKRPRSQS KNLAVAELRT MIHSLFVESC ASMNLASRLL FVVLTVCVSH QALPGGSKRP TGSENHSSEE ATEDPRLTNG RNKVKKKQGP
701: VGTFDSYVLA AVCALSCELQ LFPILCKSAT NSKVKDSIKI LKPGKNNGIS NELQNSISSA ILHTRRILGI LEALFSLKPS SVGTSWNYSS NEIVAAAMVA
801: AHVSELFRRS RPCLNALSSL KRCKWDAEIS TRASSLYHLI DLHGKTVSSI VNKAEPLEAH LTFTSVKRDG QQHIEENSTS SSGNGNLEKK NASASHMKNG
901: FSRPLLKCSE EARRNGNVAS TSGKVPATLQ AEASDLANFL TMDRNGGYRG SQTLLSSVIS EKQELCFSVV SLLWHKL
0001: MASSSSSERW IDGLQFSSLL WPPPRDPQQH KDQVVAYVEY FGQFTSEQFP DDIAELVRHQ YPSTEKRLLD DVLAMFVLHH PEHGHAVILP IISCLIDGSL
0101: VYSKEAHPFA SFISLVCPSS ENDYSEQWAL ACGEILRILT HYNRPIYKTE QQNGDTERNC LSKATTSGSP TSEPKAGSPT QHERKPLRPL SPWISDILLA
0201: APLGIRSDYF RWCSGVMGKY AAGELKPPTI ASRGSGKHPQ LMPSTPRWAV ANGAGVILSV CDDEVARYET ATLTAVAVPA LLLPPPTTSL DEHLVAGLPA
0301: LEPYARLFHR YYAIATPSAT QRLLLGLLEA PPSWAPDALD AAVQLVELLR AAEDYASGVR LPRNWMHLHF LRAIGIAMSM RAGVAADAAA ALLFRILSQP
0401: ALLFPPLSQV EGVEIQHAPI GGYSSNYRKQ IEVPAAEATI EATAQGIASM LCAHGPEVEW RICTIWEAAY GLIPLNSSAV DLPEIIVATP LQPPILSWNL
0501: YIPLLKVLEY LPRGSPSEAC LMKIFVATVE TILSRTFPPE SSRELTRKAR SSFTTRSATK NLAMSELRAM VHALFLESCA GVELASRLLF VVLTVCVSHE
0601: AQSSGSKRPR SEYASTTENI EANQPVSNNQ TANRKSRNVK GQGPVAAFDS YVLAAVCALA CEVQLYPMIS GGGNFSNSAV AGTITKPVKI NGSSKEYGAG
0701: IDSAISHTRR ILAILEALFS LKPSSVGTPW SYSSSEIVAA AMVAAHISEL FRRSKALTHA LSGLMRCKWD KEIHKRASSL YNLIDVHSKV VASIVDKAEP
0801: LEAYLKNTPV QKDSVTCLNW KQENTCASTT CFDTAVTSAS RTEMNPRGNH KYARHSDEGS GRPSEKGIKD FLLDASDLAN FLTADRLAGF YCGTQKLLRS
0901: VLAEKPELSF SVVSLLWHKL IAAPEIQPTA ESTSAQQGWR QVVDALCNVV SATPAKAAAA VVLQAERELQ PWIAKDDEEG QKMWKINQRI VKVLVELMRN
1001: HDRPESLVIL ASASDLLLRA TDGMLVDGEA CTLPQLELLE ATARAIQPVL AWGPSGLAVV DGLSNLLKCR LPATIRCLSH PSAHVRALST SVLRDIMNQS
1101: SIPIKVTPKL PTTEKNGMNS PSYRFFNAAS IDWKADIQNC LNWEAHSLLS TTMPTQFLDT AARELGCTIS LSQ
0101: VYSKEAHPFA SFISLVCPSS ENDYSEQWAL ACGEILRILT HYNRPIYKTE QQNGDTERNC LSKATTSGSP TSEPKAGSPT QHERKPLRPL SPWISDILLA
0201: APLGIRSDYF RWCSGVMGKY AAGELKPPTI ASRGSGKHPQ LMPSTPRWAV ANGAGVILSV CDDEVARYET ATLTAVAVPA LLLPPPTTSL DEHLVAGLPA
0301: LEPYARLFHR YYAIATPSAT QRLLLGLLEA PPSWAPDALD AAVQLVELLR AAEDYASGVR LPRNWMHLHF LRAIGIAMSM RAGVAADAAA ALLFRILSQP
0401: ALLFPPLSQV EGVEIQHAPI GGYSSNYRKQ IEVPAAEATI EATAQGIASM LCAHGPEVEW RICTIWEAAY GLIPLNSSAV DLPEIIVATP LQPPILSWNL
0501: YIPLLKVLEY LPRGSPSEAC LMKIFVATVE TILSRTFPPE SSRELTRKAR SSFTTRSATK NLAMSELRAM VHALFLESCA GVELASRLLF VVLTVCVSHE
0601: AQSSGSKRPR SEYASTTENI EANQPVSNNQ TANRKSRNVK GQGPVAAFDS YVLAAVCALA CEVQLYPMIS GGGNFSNSAV AGTITKPVKI NGSSKEYGAG
0701: IDSAISHTRR ILAILEALFS LKPSSVGTPW SYSSSEIVAA AMVAAHISEL FRRSKALTHA LSGLMRCKWD KEIHKRASSL YNLIDVHSKV VASIVDKAEP
0801: LEAYLKNTPV QKDSVTCLNW KQENTCASTT CFDTAVTSAS RTEMNPRGNH KYARHSDEGS GRPSEKGIKD FLLDASDLAN FLTADRLAGF YCGTQKLLRS
0901: VLAEKPELSF SVVSLLWHKL IAAPEIQPTA ESTSAQQGWR QVVDALCNVV SATPAKAAAA VVLQAERELQ PWIAKDDEEG QKMWKINQRI VKVLVELMRN
1001: HDRPESLVIL ASASDLLLRA TDGMLVDGEA CTLPQLELLE ATARAIQPVL AWGPSGLAVV DGLSNLLKCR LPATIRCLSH PSAHVRALST SVLRDIMNQS
1101: SIPIKVTPKL PTTEKNGMNS PSYRFFNAAS IDWKADIQNC LNWEAHSLLS TTMPTQFLDT AARELGCTIS LSQ
Arabidopsis Description
GIProtein GIGANTEA [Source:UniProtKB/Swiss-Prot;Acc:Q9SQI2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.