Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU3Hr1G021140.2 | |
| HORVU3Hr1G021150.2 | |
| HORVU5Hr1G080210.1 | |
| HORVU5Hr1G117990.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G286400.1 | Wheat | nucleus | 91.63 | 93.53 |
| TraesCS4A01G017700.1 | Wheat | nucleus | 92.08 | 93.14 |
| TraesCS4D01G285100.1 | Wheat | nucleus | 92.99 | 92.99 |
| Os03t0169600-01 | Rice | nucleus | 76.47 | 76.82 |
| EER95426 | Sorghum | nucleus | 70.14 | 73.11 |
| Zm00001d027846_P001 | Maize | nucleus | 65.16 | 66.67 |
| CDY00286 | Canola | nucleus | 26.24 | 42.49 |
| CDY69084 | Canola | nucleus | 26.24 | 42.34 |
| AT5G62430.1 | Thale cress | nucleus | 28.28 | 41.95 |
| CDY67518 | Canola | nucleus | 27.38 | 41.44 |
| CDY69244 | Canola | nucleus | 27.15 | 41.1 |
| Bra029261.1-P | Field mustard | nucleus | 26.92 | 40.75 |
| Bra010082.1-P | Field mustard | nucleus | 24.43 | 40.3 |
| VIT_17s0000g06310.t01 | Wine grape | nucleus | 39.37 | 36.79 |
| VIT_01s0026g02580.t01 | Wine grape | nucleus | 38.01 | 35.22 |
| CDY47405 | Canola | nucleus | 33.94 | 34.97 |
| CDY66672 | Canola | nucleus | 33.03 | 34.19 |
| Bra018141.1-P | Field mustard | nucleus | 33.03 | 34.19 |
| KRH54567 | Soybean | nucleus | 35.29 | 34.06 |
| KRH63324 | Soybean | nucleus | 36.2 | 34.04 |
| KRH56903 | Soybean | nucleus | 35.97 | 33.62 |
| KRH03487 | Soybean | nucleus | 35.75 | 33.55 |
| AT3G47500.1 | Thale cress | nucleus | 33.94 | 33.48 |
| KRH18471 | Soybean | nucleus | 36.65 | 33.2 |
| KRG93541 | Soybean | nucleus | 28.28 | 32.47 |
| PGSC0003DMT400050273 | Potato | nucleus | 36.88 | 32.41 |
| Solyc03g115940.2.1 | Tomato | nucleus | 36.65 | 32.34 |
| HORVU3Hr1G072970.1 | Barley | nucleus | 14.71 | 32.18 |
| PGSC0003DMT400083080 | Potato | nucleus | 33.94 | 30.49 |
| Solyc06g069760.2.1 | Tomato | nucleus | 33.48 | 30.08 |
| HORVU2Hr1G017290.1 | Barley | nucleus | 31.45 | 29.26 |
| HORVU1Hr1G076800.1 | Barley | nucleus | 15.16 | 28.76 |
| HORVU2Hr1G119110.3 | Barley | nucleus | 13.12 | 27.23 |
| HORVU3Hr1G061840.2 | Barley | nucleus, plastid | 9.95 | 26.35 |
| HORVU2Hr1G119160.3 | Barley | nucleus, plastid | 12.22 | 25.96 |
| HORVU4Hr1G013890.1 | Barley | nucleus | 12.44 | 20.6 |
Protein Annotations
| MapMan:15.5.1.5 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:HORVU4Hr1G074990 | EnsemblPlants:HORVU4Hr1G074990.1 |
| InterPro:IPR003851 | UniProt:M0YS30 | PFAM:PD007478 | PFAM:PF02701 | ScanProsite:PS01361 | PFscan:PS50884 |
| PANTHER:PTHR31089 | PANTHER:PTHR31089:SF3 | UniParc:UPI00029686DE | InterPro:Znf_Dof | SEG:seg | : |
Description
No Description!
Coordinates
chrchr4H:-:596122913..596125612
Molecular Weight (calculated)
47818.6 Da
IEP (calculated)
7.322
GRAVY (calculated)
-0.717
Length
442 amino acids
Sequence
(BLAST)
(BLAST)
001: MGQFRAAAGG GGDCLIKLFG KTIPVPDAGA GDVDKDLQHR GSTTAEPKVQ ESAPQDSTGS PPQPEVVDVE DPSAVKNSAA DQQEEEEEQS DTANQKEKLK
101: KPDKILPCPR CSSMDTKFCY YNNYNINQPR HFCKNCQRYW TAGGAMRNVP VGAGRRKSKS ISAASHFLQR IRAALPGDPL CTPVNTNGTV LSFGSDASTL
201: DVVSEQMKHM KELSSVTRTE NTDAPSVGSC AEGWAKGEES SQMNSRERVA ADRSPNFAQH PCMNGAAMWP FSCAPSPAYF TPNVAIPFYP AAAAAYWGCM
301: VPGAWNTPWQ PQPQPQPQSQ CQSSSPPSAA SPVSTMSSCF QSRKHPRDGD EERDTKGNGK VWVPKTIRID DVDEVARSSI WSLIGIKGDK VGTDDGRGCK
401: LARVFDPKDE AKTTTHRVDN SLPFSKGNPA ALSRSVNFQE RS
101: KPDKILPCPR CSSMDTKFCY YNNYNINQPR HFCKNCQRYW TAGGAMRNVP VGAGRRKSKS ISAASHFLQR IRAALPGDPL CTPVNTNGTV LSFGSDASTL
201: DVVSEQMKHM KELSSVTRTE NTDAPSVGSC AEGWAKGEES SQMNSRERVA ADRSPNFAQH PCMNGAAMWP FSCAPSPAYF TPNVAIPFYP AAAAAYWGCM
301: VPGAWNTPWQ PQPQPQPQSQ CQSSSPPSAA SPVSTMSSCF QSRKHPRDGD EERDTKGNGK VWVPKTIRID DVDEVARSSI WSLIGIKGDK VGTDDGRGCK
401: LARVFDPKDE AKTTTHRVDN SLPFSKGNPA ALSRSVNFQE RS
001: MLETKDPAIK LFGMKIPFPT VLEVADEEEE KNQNKTLTDQ SEKDKTLKKP TKILPCPRCN SMETKFCYYN NYNVNQPRHF CKACQRYWTS GGTMRSVPIG
101: AGRRKNKNNS PTSHYHHVTI SETNGPVLSF SLGDDQKVSS NRFGNQKLVA RIENNDERSN NNTSNGLNCF PGVSWPYTWN PAFYPVYPYW SMPVLSSPVS
201: SSPTSTLGKH SRDEDETVKQ KQRNGSVLVP KTLRIDDPNE AAKSSIWTTL GIKNEVMFNG FGSKKEVKLS NKEETETSLV LCANPAALSR SINFHEQM
101: AGRRKNKNNS PTSHYHHVTI SETNGPVLSF SLGDDQKVSS NRFGNQKLVA RIENNDERSN NNTSNGLNCF PGVSWPYTWN PAFYPVYPYW SMPVLSSPVS
201: SSPTSTLGKH SRDEDETVKQ KQRNGSVLVP KTLRIDDPNE AAKSSIWTTL GIKNEVMFNG FGSKKEVKLS NKEETETSLV LCANPAALSR SINFHEQM
Arabidopsis Description
CDF1Cyclic dof factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W1E3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.