Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G347400.1 | Wheat | plastid | 81.97 | 91.39 |
| TraesCS1A01G334100.1 | Wheat | nucleus, plastid | 81.55 | 90.91 |
| TraesCS1D01G336600.1 | Wheat | nucleus, plastid | 83.26 | 90.65 |
| GSMUA_Achr2P09110_001 | Banana | nucleus | 27.47 | 53.78 |
| GSMUA_Achr4P15140_001 | Banana | nucleus | 33.91 | 53.02 |
| GSMUA_Achr4P08020_001 | Banana | nucleus | 33.91 | 52.32 |
| Zm00001d010740_P001 | Maize | nucleus | 43.78 | 48.11 |
| OQU78298 | Sorghum | mitochondrion, nucleus, plastid | 43.35 | 46.76 |
| Zm00001d038693_P001 | Maize | nucleus | 45.06 | 45.45 |
| HORVU3Hr1G072970.1 | Barley | nucleus | 37.34 | 43.07 |
| GSMUA_Achr9P06430_001 | Banana | nucleus | 27.04 | 40.91 |
| HORVU3Hr1G061840.2 | Barley | nucleus, plastid | 20.6 | 28.74 |
| HORVU2Hr1G119160.3 | Barley | nucleus, plastid | 18.88 | 21.15 |
| HORVU2Hr1G119110.3 | Barley | nucleus | 18.88 | 20.66 |
| HORVU4Hr1G013890.1 | Barley | nucleus | 18.88 | 16.48 |
| HORVU4Hr1G074990.1 | Barley | nucleus | 28.76 | 15.16 |
| HORVU2Hr1G017290.1 | Barley | nucleus | 24.46 | 12.0 |
Protein Annotations
| MapMan:15.5.1.5 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:HORVU1Hr1G076800 | EnsemblPlants:HORVU1Hr1G076800.1 | InterPro:IPR003851 |
| UniProt:M0YGP3 | PFAM:PD007478 | PFAM:PF02701 | ScanProsite:PS01361 | PFscan:PS50884 | PANTHER:PTHR31089 |
| PANTHER:PTHR31089:SF16 | UniParc:UPI0002964A0D | InterPro:Znf_Dof | SEG:seg | : | : |
Description
No Description!
Coordinates
chrchr1H:-:515709437..515711159
Molecular Weight (calculated)
24983.3 Da
IEP (calculated)
9.549
GRAVY (calculated)
-0.542
Length
233 amino acids
Sequence
(BLAST)
(BLAST)
001: MRRHLSLASE STGHTLTDMV SHSHLEMGGA AGIKLFGKVI TRQPTRQGTD GGGGGVPSKA QQAPSMSSSS SSSGRGSVEQ LEEAARARAA AAEARLPCPR
101: CRSEDTKFCY FNNYNVNQPR HFCRACHRYW TAGGAIRNVP VGSGRRKNRP VLHGASTVMS ADNPLAGSAS QGMVNGLGFH PDHGWSQVVP SPAYLGHGEM
201: EQCWWLVHQY PAQGQVNGDV QLSPSSLRVN QYA
101: CRSEDTKFCY FNNYNVNQPR HFCRACHRYW TAGGAIRNVP VGSGRRKNRP VLHGASTVMS ADNPLAGSAS QGMVNGLGFH PDHGWSQVVP SPAYLGHGEM
201: EQCWWLVHQY PAQGQVNGDV QLSPSSLRVN QYA
001: MATQDSQGIK LFGKTIAFNT RTIKNEEETH PPEQEATIAV RSSSSSDLTA EKRPDKIIAC PRCKSMETKF CYFNNYNVNQ PRHFCKGCHR YWTAGGALRN
101: VPVGAGRRKS KPPGRVVVGM LGDGNGVRQV ELINGLLVEE WQHAAAAAHG SFRHDFPMKR LRCYSDGQSC
101: VPVGAGRRKS KPPGRVVVGM LGDGNGVRQV ELINGLLVEE WQHAAAAAHG SFRHDFPMKR LRCYSDGQSC
Arabidopsis Description
CDF4Cyclic dof factor 4 [Source:UniProtKB/Swiss-Prot;Acc:O22967]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.