Factsheet for GSMUA_Achr4P08020_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P15140_001	Banana	nucleus	81.46	82.55
GSMUA_Achr2P09110_001	Banana	nucleus	49.01	62.18
GSMUA_Achr9P06430_001	Banana	nucleus	50.99	50.0
HORVU3Hr1G072970.1	Barley	nucleus	51.66	38.61
TraesCS3A01G306800.1	Wheat	nucleus	50.99	38.12
TraesCS3D01G295100.1	Wheat	nucleus	50.33	38.0
TraesCS1B01G347400.1	Wheat	plastid	52.32	37.8
TraesCS1A01G334100.1	Wheat	nucleus, plastid	51.66	37.32
TraesCS3B01G329700.1	Wheat	nucleus	50.33	37.25
TraesCS1D01G336600.1	Wheat	nucleus, plastid	52.32	36.92
Os01t0758200-01	Rice	nucleus	49.67	35.55
Zm00001d010740_P001	Maize	nucleus	49.67	35.38
Zm00001d012703_P001	Maize	nucleus	51.66	34.98
HORVU1Hr1G076800.1	Barley	nucleus	52.32	33.91
OQU78298	Sorghum	mitochondrion, nucleus, plastid	48.34	33.8
Zm00001d038693_P001	Maize	nucleus	48.34	31.6
Zm00001d043402_P001	Maize	nucleus	49.67	28.85
KXG33408	Sorghum	nucleus	49.01	28.46
GSMUA_Achr11P...	Banana	nucleus	41.06	25.62
GSMUA_Achr7P09590_001	Banana	nucleus	28.48	21.94
GSMUA_Achr6P10720_001	Banana	nucleus	38.41	21.25
GSMUA_Achr9P05020_001	Banana	nucleus	41.72	19.21
GSMUA_Achr5P07660_001	Banana	nucleus	38.41	19.21
GSMUA_Achr2P13350_001	Banana	nucleus	29.14	18.97
GSMUA_Achr10P...	Banana	nucleus	28.48	18.86
GSMUA_Achr2P15700_001	Banana	nucleus	27.81	18.75
GSMUA_Achr3P01850_001	Banana	nucleus	41.06	17.92
GSMUA_Achr4P30860_001	Banana	nucleus	27.15	17.52
GSMUA_Achr10P...	Banana	nucleus	40.4	17.09
GSMUA_Achr6P29500_001	Banana	nucleus	26.49	16.74
GSMUA_Achr2P22000_001	Banana	nucleus	41.72	16.67
GSMUA_Achr6P32240_001	Banana	nucleus	40.4	15.68
GSMUA_Achr11P...	Banana	nucleus	39.74	14.25
GSMUA_Achr11P...	Banana	nucleus	37.75	12.23
GSMUA_Achr2P11520_001	Banana	nucleus	34.44	11.18

Protein Annotations

MapMan:15.5.1.5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr4G08020_001	EnsemblPlants:GSMUA_Achr4P08020_001	EnsemblPlants:GSMUA_Achr4T08020_001
InterPro:IPR003851	UniProt:M0SM19	PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884
PANTHER:PTHR31089	UniParc:UPI000294E1B7	InterPro:Znf_Dof	SEG:seg	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G08020_001]

Coordinates

chr4:-:5922502..5922957

Molecular Weight (calculated)

16728.9 Da

IEP (calculated)

9.568

GRAVY (calculated)

-0.569

Length

151 amino acids

Sequence
(BLAST)

001: MGEVDEATSI KLFGAVILKE DTQAKEKKEA KDETAAAREA ASAVALPCPR CQSKETKFCY FNNYNVNQPR HFCRACHRYW TAGGTLRNVP VGAGRRKMRR
101: APHAGTTPSA GGTTCVMAYP SPSYLAERWL LRQRPEVQPT ADFATFNRGL C

Best Arabidopsis Sequence Match ( AT2G34140.1 )
(BLAST)

001: MATQDSQGIK LFGKTIAFNT RTIKNEEETH PPEQEATIAV RSSSSSDLTA EKRPDKIIAC PRCKSMETKF CYFNNYNVNQ PRHFCKGCHR YWTAGGALRN
101: VPVGAGRRKS KPPGRVVVGM LGDGNGVRQV ELINGLLVEE WQHAAAAAHG SFRHDFPMKR LRCYSDGQSC

Arabidopsis Description

CDF4Cyclic dof factor 4 [Source:UniProtKB/Swiss-Prot;Acc:O22967]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.