Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P08020_001 | Banana | nucleus | 82.55 | 81.46 |
| GSMUA_Achr2P09110_001 | Banana | nucleus | 51.01 | 63.87 |
| GSMUA_Achr9P06430_001 | Banana | nucleus | 53.02 | 51.3 |
| TraesCS1B01G347400.1 | Wheat | plastid | 53.02 | 37.8 |
| HORVU3Hr1G072970.1 | Barley | nucleus | 51.01 | 37.62 |
| TraesCS3D01G295100.1 | Wheat | nucleus | 49.66 | 37.0 |
| TraesCS1A01G334100.1 | Wheat | nucleus, plastid | 51.68 | 36.84 |
| TraesCS3A01G306800.1 | Wheat | nucleus | 49.66 | 36.63 |
| TraesCS1D01G336600.1 | Wheat | nucleus, plastid | 52.35 | 36.45 |
| TraesCS3B01G329700.1 | Wheat | nucleus | 49.66 | 36.27 |
| Os01t0758200-01 | Rice | nucleus | 49.66 | 35.07 |
| Zm00001d010740_P001 | Maize | nucleus | 48.99 | 34.43 |
| OQU78298 | Sorghum | mitochondrion, nucleus, plastid | 49.66 | 34.26 |
| HORVU1Hr1G076800.1 | Barley | nucleus | 53.02 | 33.91 |
| Zm00001d012703_P001 | Maize | nucleus | 50.34 | 33.63 |
| Zm00001d038693_P001 | Maize | nucleus | 49.66 | 32.03 |
| Zm00001d043402_P001 | Maize | nucleus | 48.99 | 28.08 |
| KXG33408 | Sorghum | nucleus | 48.32 | 27.69 |
| GSMUA_Achr11P... | Banana | nucleus | 40.94 | 25.21 |
| GSMUA_Achr7P09590_001 | Banana | nucleus | 30.2 | 22.96 |
| GSMUA_Achr6P10720_001 | Banana | nucleus | 40.27 | 21.98 |
| GSMUA_Achr10P... | Banana | nucleus | 30.87 | 20.18 |
| GSMUA_Achr9P05020_001 | Banana | nucleus | 44.3 | 20.12 |
| GSMUA_Achr2P15700_001 | Banana | nucleus | 30.2 | 20.09 |
| GSMUA_Achr2P13350_001 | Banana | nucleus | 30.87 | 19.83 |
| GSMUA_Achr5P07660_001 | Banana | nucleus | 39.6 | 19.54 |
| GSMUA_Achr3P01850_001 | Banana | nucleus | 42.95 | 18.5 |
| GSMUA_Achr4P30860_001 | Banana | nucleus | 28.86 | 18.38 |
| GSMUA_Achr2P22000_001 | Banana | nucleus | 44.3 | 17.46 |
| GSMUA_Achr6P29500_001 | Banana | nucleus | 27.52 | 17.15 |
| GSMUA_Achr10P... | Banana | nucleus | 40.27 | 16.81 |
| GSMUA_Achr6P32240_001 | Banana | nucleus | 42.28 | 16.2 |
| GSMUA_Achr11P... | Banana | nucleus | 41.61 | 14.73 |
| GSMUA_Achr11P... | Banana | nucleus | 39.6 | 12.66 |
| GSMUA_Achr2P11520_001 | Banana | nucleus | 35.57 | 11.4 |
Protein Annotations
| MapMan:15.5.1.5 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr4G15140_001 | EnsemblPlants:GSMUA_Achr4P15140_001 |
| EnsemblPlants:GSMUA_Achr4T15140_001 | InterPro:IPR003851 | UniProt:M0SP29 | PFAM:PD007478 | PFAM:PF02701 | ScanProsite:PS01361 |
| PFscan:PS50884 | PANTHER:PTHR31089 | UniParc:UPI0002963D29 | InterPro:Znf_Dof | SEG:seg | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G15140_001]
Coordinates
chr4:-:11400071..11400520
Molecular Weight (calculated)
16196.3 Da
IEP (calculated)
9.557
GRAVY (calculated)
-0.477
Length
149 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEVDEAASI KLFGAVILKE DRQAKEKKEA QDEAAAAREA AAAVALPCPR CKSKETKFCY FNNYNVNQPR HFCKACHRYW TAGGTLRNVP VGAGRRKVRR
101: APHGGVSATA GPATCVLEHP SPPYLAARWL LRPEAPPRAD YGTFNGGLC
101: APHGGVSATA GPATCVLEHP SPPYLAARWL LRPEAPPRAD YGTFNGGLC
001: MATQDSQGIK LFGKTIAFNT RTIKNEEETH PPEQEATIAV RSSSSSDLTA EKRPDKIIAC PRCKSMETKF CYFNNYNVNQ PRHFCKGCHR YWTAGGALRN
101: VPVGAGRRKS KPPGRVVVGM LGDGNGVRQV ELINGLLVEE WQHAAAAAHG SFRHDFPMKR LRCYSDGQSC
101: VPVGAGRRKS KPPGRVVVGM LGDGNGVRQV ELINGLLVEE WQHAAAAAHG SFRHDFPMKR LRCYSDGQSC
Arabidopsis Description
CDF4Cyclic dof factor 4 [Source:UniProtKB/Swiss-Prot;Acc:O22967]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.