Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G306800.1 | Wheat | nucleus | 97.06 | 98.02 |
| TraesCS3D01G295100.1 | Wheat | nucleus | 95.1 | 97.0 |
| HORVU3Hr1G072970.1 | Barley | nucleus | 93.63 | 94.55 |
| Os01t0758200-01 | Rice | nucleus | 70.1 | 67.77 |
| Zm00001d012703_P001 | Maize | nucleus | 59.31 | 54.26 |
| GSMUA_Achr2P09110_001 | Banana | nucleus | 31.37 | 53.78 |
| Zm00001d043402_P001 | Maize | nucleus | 66.18 | 51.92 |
| GSMUA_Achr4P08020_001 | Banana | nucleus | 37.25 | 50.33 |
| GSMUA_Achr4P15140_001 | Banana | nucleus | 36.27 | 49.66 |
| KXG33408 | Sorghum | nucleus | 63.24 | 49.62 |
| GSMUA_Achr9P06430_001 | Banana | nucleus | 36.27 | 48.05 |
| TraesCS1B01G347400.1 | Wheat | plastid | 42.16 | 41.15 |
| TraesCS3B01G305400.1 | Wheat | nucleus | 24.51 | 32.47 |
| TraesCS2B01G592600.1 | Wheat | nucleus | 21.57 | 23.66 |
| TraesCS2B01G592900.1 | Wheat | nucleus | 23.53 | 23.19 |
| TraesCS2B01G592800.1 | Wheat | nucleus, plastid | 22.55 | 21.7 |
| TraesCS2B01G592700.1 | Wheat | nucleus | 23.04 | 21.17 |
| TraesCS3B01G125100.1 | Wheat | nucleus | 22.06 | 19.57 |
| TraesCS4B01G081500.1 | Wheat | nucleus | 23.04 | 17.74 |
| TraesCS4B01G286400.1 | Wheat | nucleus | 32.84 | 15.47 |
| TraesCS5B01G249800.1 | Wheat | nucleus | 19.61 | 14.23 |
| TraesCS2B01G118000.1 | Wheat | nucleus | 27.94 | 11.9 |
| TraesCS3B01G210300.1 | Wheat | nucleus | 30.88 | 11.69 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G329700.1 | EnsemblPlantsGene:TraesCS3B01G329700 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR003851 | InterPro:Znf_Dof | PANTHER:PTHR31089 | PANTHER:PTHR31089:SF14 | PFAM:PD007478 | PFAM:PF02701 |
| PFscan:PS50884 | ScanProsite:PS01361 | SEG:seg | MapMan:15.5.1.5 | : | : |
Description
No Description!
Coordinates
chr3B:-:532666387..532667948
Molecular Weight (calculated)
22196.0 Da
IEP (calculated)
9.904
GRAVY (calculated)
-0.692
Length
204 amino acids
Sequence
(BLAST)
(BLAST)
001: MLSHVEMAPA GAGGGFKLFG KVITQCVEGT QASPSPSPVF AAQDEERRLH GETDRTTTAV KREAADMDSS QQQQQQGAEA SRRTQLQESA EARAAAAPLP
101: CPRCRSRETK FCYFNNYNVN QPRHFCKACH RYWTAGGALR NVPIGAGRRK NRPLGPIATV AGHHHHHHRA AAGFVLGFPS PSSSPTSPPP VYADRWQLGP
201: DGRF
101: CPRCRSRETK FCYFNNYNVN QPRHFCKACH RYWTAGGALR NVPIGAGRRK NRPLGPIATV AGHHHHHHRA AAGFVLGFPS PSSSPTSPPP VYADRWQLGP
201: DGRF
001: MATQDSQGIK LFGKTIAFNT RTIKNEEETH PPEQEATIAV RSSSSSDLTA EKRPDKIIAC PRCKSMETKF CYFNNYNVNQ PRHFCKGCHR YWTAGGALRN
101: VPVGAGRRKS KPPGRVVVGM LGDGNGVRQV ELINGLLVEE WQHAAAAAHG SFRHDFPMKR LRCYSDGQSC
101: VPVGAGRRKS KPPGRVVVGM LGDGNGVRQV ELINGLLVEE WQHAAAAAHG SFRHDFPMKR LRCYSDGQSC
Arabidopsis Description
CDF4Cyclic dof factor 4 [Source:UniProtKB/Swiss-Prot;Acc:O22967]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.