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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 2
  • nucleus 2
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS3B01G329700.1 Wheat nucleus 94.55 93.63
TraesCS3A01G306800.1 Wheat nucleus 92.08 92.08
TraesCS3D01G295100.1 Wheat nucleus 91.09 92.0
Os01t0758200-01 Rice nucleus 70.79 67.77
GSMUA_Achr2P09110_001 Banana nucleus 32.18 54.62
Zm00001d012703_P001 Maize nucleus 59.9 54.26
GSMUA_Achr4P08020_001 Banana nucleus 38.61 51.66
GSMUA_Achr4P15140_001 Banana nucleus 37.62 51.01
Zm00001d043402_P001 Maize nucleus 65.35 50.77
KXG33408 Sorghum nucleus 62.87 48.85
GSMUA_Achr9P06430_001 Banana nucleus 37.13 48.7
HORVU1Hr1G076800.1 Barley nucleus 43.07 37.34
HORVU3Hr1G061840.2 Barley nucleus, plastid 24.75 29.94
HORVU2Hr1G119160.3 Barley nucleus, plastid 22.28 21.63
HORVU2Hr1G119110.3 Barley nucleus 21.78 20.66
HORVU4Hr1G013890.1 Barley nucleus 21.78 16.48
HORVU4Hr1G074990.1 Barley nucleus 32.18 14.71
HORVU2Hr1G017290.1 Barley nucleus 27.72 11.79
Protein Annotations
MapMan:15.5.1.5UniProt:A0A287LMC3GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006355
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987EnsemblPlantsGene:HORVU3Hr1G072970EnsemblPlants:HORVU3Hr1G072970.1
InterPro:IPR003851PFAM:PD007478PFAM:PF02701ScanProsite:PS01361PFscan:PS50884PANTHER:PTHR31089
PANTHER:PTHR31089:SF14UniParc:UPI000B485ABDInterPro:Znf_DofSEG:seg::
Description
No Description!
Coordinates
chrchr3H:-:550537437..550539346
Molecular Weight (calculated)
21882.7 Da
IEP (calculated)
10.121
GRAVY (calculated)
-0.628
Length
202 amino acids
Sequence
(BLAST)
001: MLSHVEMAPA GAAGGFKLFG KVITQCVEGT QASPSPSPSA SPVFAAQDED RRLHGETDRT AIKREAADME SSRQQQQGAE ASRRTQLQES AEARAAAAPL
101: PCPRCRSRET KFCYFNNYNV NQPRHFCKAC HRYWTAGGAL RNVPIGAGRR KNRPLGPIAT VAGHHHRAAA GFVLGFPSPS SSPTSPSPVY ADRWQLGPDP
201: RF
Best Arabidopsis Sequence Match ( AT2G34140.1 )
(BLAST)
001: MATQDSQGIK LFGKTIAFNT RTIKNEEETH PPEQEATIAV RSSSSSDLTA EKRPDKIIAC PRCKSMETKF CYFNNYNVNQ PRHFCKGCHR YWTAGGALRN
101: VPVGAGRRKS KPPGRVVVGM LGDGNGVRQV ELINGLLVEE WQHAAAAAHG SFRHDFPMKR LRCYSDGQSC
Arabidopsis Description
CDF4Cyclic dof factor 4 [Source:UniProtKB/Swiss-Prot;Acc:O22967]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.