Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 2
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS3B01G329700.1 | Wheat | nucleus | 94.55 | 93.63 |
TraesCS3A01G306800.1 | Wheat | nucleus | 92.08 | 92.08 |
TraesCS3D01G295100.1 | Wheat | nucleus | 91.09 | 92.0 |
Os01t0758200-01 | Rice | nucleus | 70.79 | 67.77 |
GSMUA_Achr2P09110_001 | Banana | nucleus | 32.18 | 54.62 |
Zm00001d012703_P001 | Maize | nucleus | 59.9 | 54.26 |
GSMUA_Achr4P08020_001 | Banana | nucleus | 38.61 | 51.66 |
GSMUA_Achr4P15140_001 | Banana | nucleus | 37.62 | 51.01 |
Zm00001d043402_P001 | Maize | nucleus | 65.35 | 50.77 |
KXG33408 | Sorghum | nucleus | 62.87 | 48.85 |
GSMUA_Achr9P06430_001 | Banana | nucleus | 37.13 | 48.7 |
HORVU1Hr1G076800.1 | Barley | nucleus | 43.07 | 37.34 |
HORVU3Hr1G061840.2 | Barley | nucleus, plastid | 24.75 | 29.94 |
HORVU2Hr1G119160.3 | Barley | nucleus, plastid | 22.28 | 21.63 |
HORVU2Hr1G119110.3 | Barley | nucleus | 21.78 | 20.66 |
HORVU4Hr1G013890.1 | Barley | nucleus | 21.78 | 16.48 |
HORVU4Hr1G074990.1 | Barley | nucleus | 32.18 | 14.71 |
HORVU2Hr1G017290.1 | Barley | nucleus | 27.72 | 11.79 |
Protein Annotations
MapMan:15.5.1.5 | UniProt:A0A287LMC3 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:HORVU3Hr1G072970 | EnsemblPlants:HORVU3Hr1G072970.1 |
InterPro:IPR003851 | PFAM:PD007478 | PFAM:PF02701 | ScanProsite:PS01361 | PFscan:PS50884 | PANTHER:PTHR31089 |
PANTHER:PTHR31089:SF14 | UniParc:UPI000B485ABD | InterPro:Znf_Dof | SEG:seg | : | : |
Description
No Description!
Coordinates
chrchr3H:-:550537437..550539346
Molecular Weight (calculated)
21882.7 Da
IEP (calculated)
10.121
GRAVY (calculated)
-0.628
Length
202 amino acids
Sequence
(BLAST)
(BLAST)
001: MLSHVEMAPA GAAGGFKLFG KVITQCVEGT QASPSPSPSA SPVFAAQDED RRLHGETDRT AIKREAADME SSRQQQQGAE ASRRTQLQES AEARAAAAPL
101: PCPRCRSRET KFCYFNNYNV NQPRHFCKAC HRYWTAGGAL RNVPIGAGRR KNRPLGPIAT VAGHHHRAAA GFVLGFPSPS SSPTSPSPVY ADRWQLGPDP
201: RF
101: PCPRCRSRET KFCYFNNYNV NQPRHFCKAC HRYWTAGGAL RNVPIGAGRR KNRPLGPIAT VAGHHHRAAA GFVLGFPSPS SSPTSPSPVY ADRWQLGPDP
201: RF
001: MATQDSQGIK LFGKTIAFNT RTIKNEEETH PPEQEATIAV RSSSSSDLTA EKRPDKIIAC PRCKSMETKF CYFNNYNVNQ PRHFCKGCHR YWTAGGALRN
101: VPVGAGRRKS KPPGRVVVGM LGDGNGVRQV ELINGLLVEE WQHAAAAAHG SFRHDFPMKR LRCYSDGQSC
101: VPVGAGRRKS KPPGRVVVGM LGDGNGVRQV ELINGLLVEE WQHAAAAAHG SFRHDFPMKR LRCYSDGQSC
Arabidopsis Description
CDF4Cyclic dof factor 4 [Source:UniProtKB/Swiss-Prot;Acc:O22967]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.