Factsheet for TraesCS3D01G295100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G329700.1	Wheat	nucleus	97.0	95.1
TraesCS3A01G306800.1	Wheat	nucleus	95.5	94.55
HORVU3Hr1G072970.1	Barley	nucleus	92.0	91.09
Os01t0758200-01	Rice	nucleus	68.5	64.93
GSMUA_Achr2P09110_001	Banana	nucleus	32.0	53.78
Zm00001d012703_P001	Maize	nucleus	59.0	52.91
Zm00001d043402_P001	Maize	nucleus	66.0	50.77
GSMUA_Achr4P08020_001	Banana	nucleus	38.0	50.33
GSMUA_Achr4P15140_001	Banana	nucleus	37.0	49.66
GSMUA_Achr9P06430_001	Banana	nucleus	37.0	48.05
KXG33408	Sorghum	nucleus	62.0	47.69
TraesCS1D01G336600.1	Wheat	nucleus, plastid	43.5	40.65
TraesCS3D01G271300.1	Wheat	nucleus	25.0	32.89
TraesCS2D01G563400.1	Wheat	nucleus	23.5	22.71
TraesCS2D01G563200.1	Wheat	plastid	23.5	21.27
TraesCS3D01G108600.1	Wheat	nucleus	24.0	20.87
TraesCS2D01G563000.1	Wheat	nucleus, plastid	22.0	20.28
TraesCS2D01G563100.1	Wheat	nucleus	22.0	19.56
TraesCS4D01G080100.1	Wheat	nucleus	23.0	17.49
TraesCS4D01G285100.1	Wheat	nucleus	34.0	15.38
TraesCS5D01G259700.1	Wheat	nucleus	20.0	14.23
TraesCS3D01G193100.1	Wheat	nucleus	29.0	12.18
TraesCS3D01G185500.2	Wheat	nucleus	32.0	11.9
TraesCS2D01G100300.1	Wheat	mitochondrion, nucleus	28.5	11.38

Protein Annotations

EnsemblPlants:TraesCS3D01G295100.1	EnsemblPlantsGene:TraesCS3D01G295100	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003851	InterPro:Znf_Dof	PANTHER:PTHR31089	PANTHER:PTHR31089:SF14	PFAM:PD007478	PFAM:PF02701
PFscan:PS50884	ScanProsite:PS01361	SEG:seg	MapMan:15.5.1.5	:	:

Description

No Description!

Coordinates

chr3D:-:406772257..406773084

Molecular Weight (calculated)

21804.5 Da

IEP (calculated)

10.318

GRAVY (calculated)

-0.774

Length

200 amino acids

Sequence
(BLAST)

001: MAPAGAGGGF KLFGKVITQC VEGTQASPSP SPAFAAQDEE RRLHGETDRT TTAVKREAAD MDSSPQHQQQ QGAEASRRTQ LQESAEARAA AAPLPCPRCR
101: SRETKFCYFN NYNVNQPRHF CKACHRYWTA GGALRNVPIG AGRRKNRPLG PIATVAGHHH HHHQRAAAGF VLGFPSPSSS PTSPPPVYAD RWQLGPDRRF

Best Arabidopsis Sequence Match ( AT5G62430.1 )
(BLAST)

001: MLETKDPAIK LFGMKIPFPT VLEVADEEEE KNQNKTLTDQ SEKDKTLKKP TKILPCPRCN SMETKFCYYN NYNVNQPRHF CKACQRYWTS GGTMRSVPIG
101: AGRRKNKNNS PTSHYHHVTI SETNGPVLSF SLGDDQKVSS NRFGNQKLVA RIENNDERSN NNTSNGLNCF PGVSWPYTWN PAFYPVYPYW SMPVLSSPVS
201: SSPTSTLGKH SRDEDETVKQ KQRNGSVLVP KTLRIDDPNE AAKSSIWTTL GIKNEVMFNG FGSKKEVKLS NKEETETSLV LCANPAALSR SINFHEQM

Arabidopsis Description

CDF1Cyclic dof factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W1E3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.