Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G271700.1 | Wheat | nucleus | 96.71 | 94.84 |
| TraesCS3B01G305400.1 | Wheat | nucleus | 94.74 | 93.51 |
| HORVU3Hr1G061840.2 | Barley | nucleus, plastid | 90.13 | 82.04 |
| OQU87316 | Sorghum | nucleus | 60.53 | 54.76 |
| Zm00001d043904_P001 | Maize | nucleus | 65.79 | 43.67 |
| Os01t0673700-00 | Rice | nucleus | 72.37 | 33.43 |
| TraesCS3D01G295100.1 | Wheat | nucleus | 32.89 | 25.0 |
| TraesCS1D01G336600.1 | Wheat | nucleus, plastid | 31.58 | 22.43 |
| TraesCS2D01G563400.1 | Wheat | nucleus | 26.32 | 19.32 |
| TraesCS2D01G563200.1 | Wheat | plastid | 27.63 | 19.0 |
| TraesCS2D01G563000.1 | Wheat | nucleus, plastid | 26.97 | 18.89 |
| TraesCS2D01G563100.1 | Wheat | nucleus | 26.97 | 18.22 |
| TraesCS4D01G080100.1 | Wheat | nucleus | 30.26 | 17.49 |
| TraesCS3D01G108600.1 | Wheat | nucleus | 24.34 | 16.09 |
| TraesCS5D01G259700.1 | Wheat | nucleus | 29.61 | 16.01 |
| TraesCS3D01G193100.1 | Wheat | nucleus | 32.89 | 10.5 |
| TraesCS4D01G285100.1 | Wheat | nucleus | 30.26 | 10.41 |
| TraesCS3D01G185500.2 | Wheat | nucleus | 28.29 | 7.99 |
| TraesCS2D01G100300.1 | Wheat | mitochondrion, nucleus | 25.66 | 7.78 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G271300.1 | EnsemblPlantsGene:TraesCS3D01G271300 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR003851 | InterPro:Znf_Dof | PANTHER:PTHR31089 | PANTHER:PTHR31089:SF5 | PFAM:PD007478 | PFAM:PF02701 |
| PFscan:PS50884 | ScanProsite:PS01361 | SEG:seg | MapMan:15.5.1.5 | : | : |
Description
No Description!
Coordinates
chr3D:-:376169683..376170141
Molecular Weight (calculated)
15766.3 Da
IEP (calculated)
10.875
GRAVY (calculated)
-0.597
Length
152 amino acids
Sequence
(BLAST)
(BLAST)
001: MANLPTHATN ADASGFKLFG QVIQPDAHRS APASTSVSTG QSAAAPPPQP PPPPPSTTQP AAVGGEPLPC PRCGSRETKF CYFNNYNVRQ PRHLCRACRR
101: YWTAGGALRR VATASPGRRR PRPSARSAAA AASATASASE EGAAAESVDS RS
101: YWTAGGALRR VATASPGRRR PRPSARSAAA AASATASASE EGAAAESVDS RS
001: MATQDSQGIK LFGKTITFNA NITQTIKKEE QQQQQQPELQ ATTAVRSPSS DLTAEKRPDK IIPCPRCKSM ETKFCYFNNY NVNQPRHFCK GCQRYWTAGG
101: ALRNVPVGAG RRKSKPPGRV GGFAELLGAA TGAVDQVELD ALLVEEWRAA TASHGGFRHD FPVKRLRCYT DGQSC
101: ALRNVPVGAG RRKSKPPGRV GGFAELLGAA TGAVDQVELD ALLVEEWRAA TASHGGFRHD FPVKRLRCYT DGQSC
Arabidopsis Description
DOF1.5Uncharacterized protein At1g29160 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUY0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.