Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G305400.1 | Wheat | nucleus | 97.42 | 98.05 |
| TraesCS3D01G271300.1 | Wheat | nucleus | 94.84 | 96.71 |
| HORVU3Hr1G061840.2 | Barley | nucleus, plastid | 89.03 | 82.63 |
| OQU87316 | Sorghum | nucleus | 61.29 | 56.55 |
| Zm00001d043904_P001 | Maize | nucleus | 65.81 | 44.54 |
| Os01t0673700-00 | Rice | nucleus | 70.32 | 33.13 |
| TraesCS3A01G306800.1 | Wheat | nucleus | 32.26 | 24.75 |
| TraesCS1A01G334100.1 | Wheat | nucleus, plastid | 30.97 | 22.97 |
| TraesCS2A01G591200.1 | Wheat | nucleus, plastid | 27.1 | 19.63 |
| TraesCS2A01G590800.1 | Wheat | plastid | 27.1 | 19.18 |
| TraesCS2A01G591100.1 | Wheat | nucleus, plastid | 25.81 | 18.96 |
| TraesCS2A01G590700.1 | Wheat | nucleus | 24.52 | 18.91 |
| TraesCS4A01G234000.1 | Wheat | nucleus | 30.97 | 18.05 |
| TraesCS2A01G591000.1 | Wheat | mitochondrion, nucleus | 27.74 | 17.27 |
| TraesCS5A01G251800.1 | Wheat | nucleus | 29.68 | 16.37 |
| TraesCS3A01G106500.1 | Wheat | nucleus | 24.52 | 15.97 |
| TraesCS4A01G017700.1 | Wheat | nucleus | 31.61 | 11.21 |
| TraesCS3A01G189600.1 | Wheat | nucleus | 32.9 | 10.71 |
| TraesCS2A01G100800.1 | Wheat | nucleus | 25.81 | 8.35 |
| TraesCS3A01G180600.1 | Wheat | nucleus | 27.74 | 7.98 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G271700.1 | EnsemblPlantsGene:TraesCS3A01G271700 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR003851 | InterPro:Znf_Dof | PANTHER:PTHR31089 | PANTHER:PTHR31089:SF5 | PFAM:PD007478 | PFAM:PF02701 |
| PFscan:PS50884 | ScanProsite:PS01361 | SEG:seg | MapMan:15.5.1.5 | : | : |
Description
No Description!
Coordinates
chr3A:-:500977975..500979026
Molecular Weight (calculated)
16003.6 Da
IEP (calculated)
10.875
GRAVY (calculated)
-0.541
Length
155 amino acids
Sequence
(BLAST)
(BLAST)
001: MANLPTHATN ADASAFKLFG QVIQPDAHRA ASAPASTSIS AGQSAAAPPP PPPPPPPPST TQQAAVGGEP LPCPRCGSRE TKFCYFNNYN VRQPRHLCRA
101: CRRYWTAGGA LRRVATASPG RRRPRPSARS AAAAASATAS ASEEGAAAES VDSRS
101: CRRYWTAGGA LRRVATASPG RRRPRPSARS AAAAASATAS ASEEGAAAES VDSRS
001: MATQDSQGIK LFGKTITFNA NITQTIKKEE QQQQQQPELQ ATTAVRSPSS DLTAEKRPDK IIPCPRCKSM ETKFCYFNNY NVNQPRHFCK GCQRYWTAGG
101: ALRNVPVGAG RRKSKPPGRV GGFAELLGAA TGAVDQVELD ALLVEEWRAA TASHGGFRHD FPVKRLRCYT DGQSC
101: ALRNVPVGAG RRKSKPPGRV GGFAELLGAA TGAVDQVELD ALLVEEWRAA TASHGGFRHD FPVKRLRCYT DGQSC
Arabidopsis Description
DOF1.5Uncharacterized protein At1g29160 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUY0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.