Factsheet for TraesCS3A01G180600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G185500.2	Wheat	nucleus	95.36	95.54
TraesCS3B01G210300.1	Wheat	nucleus	95.36	95.36
EES02731	Sorghum	nucleus	70.32	67.68
Os01t0264000-01	Rice	nucleus	60.48	65.73
Zm00001d040362_P001	Maize	nucleus	66.05	62.24
GSMUA_Achr9P05020_001	Banana	nucleus	37.29	61.28
TraesCS2A01G100800.1	Wheat	nucleus	35.62	40.08
TraesCS3A01G189600.1	Wheat	nucleus	34.51	39.08
KRH74885	Soybean	nucleus	32.1	36.12
TraesCS4A01G017700.1	Wheat	nucleus	29.13	35.93
KRH70746	Soybean	nucleus, plastid	32.28	35.88
KRH50577	Soybean	nucleus	30.8	34.66
CDY67869	Canola	nucleus	24.3	34.03
CDX95919	Canola	nucleus	23.19	33.97
KRG89621	Soybean	nucleus	30.24	33.82
CDY01768	Canola	nucleus	23.01	33.7
Bra003994.1-P	Field mustard	nucleus	23.75	33.16
CDY07344	Canola	nucleus	23.75	33.16
CDY72477	Canola	nucleus	22.63	33.15
Bra004396.1-P	Field mustard	nucleus	22.63	33.15
Bra024683.1-P	Field mustard	nucleus	20.04	33.03
CDY16193	Canola	nucleus	20.04	33.03
AT1G69570.1	Thale cress	nucleus	24.12	32.58
GSMUA_Achr2P11520_001	Banana	nucleus	27.83	32.26
TraesCS1A01G334100.1	Wheat	nucleus, plastid	12.43	32.06
TraesCS3A01G306800.1	Wheat	nucleus	11.87	31.68
CDY44994	Canola	nucleus	15.58	31.11
AT1G26790.1	Thale cress	nucleus, plastid	20.78	30.11
CDY50735	Canola	extracellular	19.67	29.12
Bra016286.1-P	Field mustard	nucleus	18.0	28.96
CDY46443	Canola	nucleus	17.81	28.66
TraesCS3A01G271700.1	Wheat	nucleus	7.98	27.74
CDY50734	Canola	nucleus	13.54	26.94
TraesCS2A01G590700.1	Wheat	nucleus	9.83	26.37
TraesCS2A01G590800.1	Wheat	plastid	10.58	26.03
TraesCS2A01G591200.1	Wheat	nucleus, plastid	9.83	24.77
TraesCS2A01G591100.1	Wheat	nucleus, plastid	9.46	24.17
TraesCS3A01G106500.1	Wheat	nucleus	10.2	23.11
TraesCS4A01G234000.1	Wheat	nucleus	10.95	22.18
TraesCS5A01G251800.1	Wheat	nucleus	11.32	21.71
TraesCS2A01G591000.1	Wheat	mitochondrion, nucleus	10.02	21.69

Protein Annotations

EnsemblPlants:TraesCS3A01G180600.1	EnsemblPlantsGene:TraesCS3A01G180600	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003851	InterPro:Znf_Dof	ncoils:Coil	PANTHER:PTHR31089	PFAM:PD007478	PFAM:PF02701
PFscan:PS50884	ScanProsite:PS01361	SEG:seg	MapMan:15.5.1.5	:	:

Description

No Description!

Coordinates

chr3A:-:208246096..208249775

Molecular Weight (calculated)

58124.4 Da

IEP (calculated)

4.800

GRAVY (calculated)

-0.815

Length

539 amino acids

Sequence
(BLAST)

001: MSDQMDSGIK LFGRVIPLVP DAAPGPPEAE ATAGSEHPPP PPPQESEAEA EADNNKEQHK ETKDKGDSEM KVDAPEEKED GGMKGDELRE RKDDEMEVDA
101: PQAKQNAETA SSSTLDHKKD DQAQISNAEE KVASDPKEEN EKKSNDESGQ DKVLKKPDKI IPCPRCNSMD TKFCYYNNYN VNQPRHFCKN CQRYWTAGGS
201: MRNVPVGAGR RKSKNSALHY RQLLMAPDCL LGSRVDISDT VNPEVLASLP SIPTQSASRN ETVLKFGPEV PLCESMVSVL NIEEQNVTNA GSVPRDETRE
301: GNSCASTTTS NNGLPANAVP PGQNGAPVYC NGVGPVPQYY LGPPFMYPWS MGWNNLPVMV PGGSMPESAS PSESCSTSSA PWMNSPMMPG SRLPAPPFPY
401: PIVPPALWGC LPSWPAAAWN TPWVGTNGCI SPSGSSNSSC SGNGSPTLGK HSRDPNPQKD DKEEKSLWVP KTLRIDDPDE AAKSSIWATL GIKPGDPGVF
501: KPFQFKGESK GQPADARPAR ALQANPAAFS RSQSFQESS

Best Arabidopsis Sequence Match ( AT5G39660.3 )
(BLAST)

001: MADPAIKLFG KTIPLPELGV VDSSSSYTGF LTETQIPVRL SDSCTGDDDD EEMGDSGLGR EEGDDVGDGG GESETDKKEE KDSECQEESL RNESNDVTTT
101: TSGITEKTET TKAAKTNEES GGTACSQEGK LKKPDKILPC PRCNSMETKF CYYNNYNVNQ PRHFCKKCQR YWTAGGTMRN VPVGAGRRKN KSPASHYNRH
201: VSITSAEAMQ KVARTDLQHP NGANLLTFGS DSVLCESMAS GLNLVEKSLL KTQTVLQEPN EGLKITVPLN QTNEEAGTVS PLPKVPCFPG PPPTWPYAWN
301: GVSWTILPFY PPPAYWSCPG VSPGAWNSFT WMPQPNSPSG SNPNSPTLGK HSRDENAAEP GTAFDETESL GREKSKPERC LWVPKTLRID DPEEAAKSSI
401: WETLGIKKDE NADTFGAFRS STKEKSSLSE GRLPGRRPEL QANPAALSRS ANFHESS

Arabidopsis Description

CDF2Cyclic dof factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZL5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.