Factsheet for TraesCS4A01G234000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G080100.1	Wheat	nucleus	96.24	97.34
TraesCS4B01G081500.1	Wheat	nucleus	96.24	96.6
HORVU4Hr1G013890.1	Barley	nucleus	90.6	90.26
Zm00001d024790_P001	Maize	nucleus	43.23	46.94
Zm00001d033325_P001	Maize	nucleus, plastid	54.14	45.86
Zm00001d013724_P001	Maize	nucleus	56.77	45.07
EER91220	Sorghum	plastid	57.14	43.3
TraesCS3A01G271700.1	Wheat	nucleus	18.05	30.97
TraesCS2A01G590700.1	Wheat	nucleus	20.3	26.87
TraesCS2A01G590800.1	Wheat	plastid	21.05	25.57
TraesCS2A01G591200.1	Wheat	nucleus, plastid	19.55	24.3
TraesCS2A01G591100.1	Wheat	nucleus, plastid	19.17	24.17
GSMUA_Achr2P13350_001	Banana	nucleus	20.68	23.71
TraesCS3A01G306800.1	Wheat	nucleus	17.67	23.27
TraesCS5A01G251800.1	Wheat	nucleus	24.06	22.78
TraesCS2A01G591000.1	Wheat	mitochondrion, nucleus	21.05	22.49
TraesCS1A01G334100.1	Wheat	nucleus, plastid	17.29	22.01
TraesCS3A01G106500.1	Wheat	nucleus	19.55	21.85
TraesCS4A01G017700.1	Wheat	nucleus	21.05	12.81
TraesCS2A01G100800.1	Wheat	nucleus	21.8	12.11
TraesCS3A01G180600.1	Wheat	nucleus	22.18	10.95
TraesCS3A01G189600.1	Wheat	nucleus	19.17	10.71

Protein Annotations

EnsemblPlants:TraesCS4A01G234000.1	EnsemblPlantsGene:TraesCS4A01G234000	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003851	InterPro:Znf_Dof	PANTHER:PTHR31992	PANTHER:PTHR31992:SF81	PFAM:PD007478	PFAM:PF02701
PFscan:PS50884	ScanProsite:PS01361	SEG:seg	MapMan:15.5.1.5	:	:

Description

No Description!

Coordinates

chr4A:+:542827942..542829242

Molecular Weight (calculated)

28045.6 Da

IEP (calculated)

9.428

GRAVY (calculated)

-0.306

Length

266 amino acids

Sequence
(BLAST)

001: MEAPLHQLAP MQQALLARPQ NCKHDAAATM AATDMACLQQ QQQLMQLQPA AANPNTPSGA AREQCPRCAS HDTKFCYYNN YNTSQPRHFC RACRRYWTLG
101: GSLRNVPIGG STRKRLRPAP QQTMRRPPVH FGAPPPPPMP AQSHSQQAPQ GGLLSSLFAF GAAPLFEGRV GFDLGLGLPG LSQVGLGGGA GEFGLHSLGL
201: RGGHAGTSAP MLWPTAFLDN GNVDTWKVSG GGAAAMWAPE FSPAPTVAQV GGNGMFHGGA QIMGQL

Best Arabidopsis Sequence Match ( AT4G38000.1 )
(BLAST)

001: MMTSSHQSNT TGFKPRRIKT TAKPPRQINN KEPSPATQPV LKCPRCDSVN TKFCYYNNYS LSQPRHYCKN CRRYWTRGGA LRNVPIGGST RNKNKPCSLQ
101: VISSPPLFSN GTSSASRELV RNHPSTAMMM MSSGGFSGYM FPLDPNFNLA SSSIESLSSF NQDLHQKLQQ QRLVTSMFLQ DSLPVNEKTV MFQNVELIPP
201: STVTTDWVFD RFATGGGATS GNHEDNDDGE GNLGNWFHNA NNNALL

Arabidopsis Description

DOF4.7Dof zinc finger protein-like [Source:UniProtKB/TrEMBL;Acc:Q0WQS4]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.