CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 5
plastid 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033325_P001	Maize	nucleus, plastid	75.5	84.39
Zm00001d013724_P001	Maize	nucleus	75.5	79.1
Zm00001d024790_P001	Maize	nucleus	52.14	74.69
TraesCS4D01G080100.1	Wheat	nucleus	43.87	58.56
TraesCS4A01G234000.1	Wheat	nucleus	43.3	57.14
TraesCS4B01G081500.1	Wheat	nucleus	43.02	56.98
HORVU4Hr1G013890.1	Barley	nucleus	43.02	56.55
EES17301	Sorghum	nucleus	33.62	42.91
OQU81009	Sorghum	nucleus	22.51	29.81
OQU87316	Sorghum	nucleus	13.68	28.57
OQU89656	Sorghum	nucleus	20.23	28.17
GSMUA_Achr2P13350_001	Banana	nucleus	17.09	25.86
EES13107	Sorghum	nucleus	15.1	23.66
OQU78298	Sorghum	mitochondrion, nucleus, plastid	13.68	22.22
KXG31638	Sorghum	nucleus	14.53	21.7
KXG33408	Sorghum	nucleus	14.24	19.23
EER95426	Sorghum	nucleus	19.37	16.04
EER91636	Sorghum	nucleus	19.09	14.08
EES00579	Sorghum	nucleus	18.52	12.7
OQU90492	Sorghum	nucleus	15.95	11.57
EES02731	Sorghum	nucleus	17.95	11.25

Protein Annotations

MapMan:15.5.1.5	EntrezGene:8062509	UniProt:C5WSA3	ProteinID:DAA34012.1	EnsemblPlants:EER91220	ProteinID:EER91220
ProteinID:EER91220.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003851	PFAM:PD007478	PFAM:PF02701
ScanProsite:PS01361	PFscan:PS50884	PANTHER:PTHR31992	PANTHER:PTHR31992:SF81	EnsemblPlantsGene:SORBI_3001G166200	UniParc:UPI0001A821A1
RefSeq:XP_002464222.1	InterPro:Znf_Dof	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:13830748..13831902

Molecular Weight (calculated)

35522.0 Da

IEP (calculated)

8.704

GRAVY (calculated)

-0.219

Length

351 amino acids

Sequence
(BLAST)

001: MAGQVMEAQA ARLQPPTMLA PPFAPLPHST TCKHDVHHHH LTTTTTTATM AATSGTTTNN VVTRTGGAAA ADMAAYLQQL QDAAEAAAKS SGGTGGAARG
101: EQCPRCASHD TKFCYYNNYN TSQPRHFCRA CRRYWTLGGS LRNVPIGGST RKRPRLAHHQ HQQHARRAPA AAAAAHVFGL GLGLGGAAPP PMMMMPPLPC
201: SSSSSSLQGQ GQGQGQGGGG LLGSLFALGA AGAPPLLEGR GAGSSSSFDF DLGLGLPTAG PLHLGEAAAA VQMQGLGLRG GGGNGNAAGS SSSFLWPAGL
301: LADNDDSVDT WTKMPPGAGA GSMWPDFFSS PPAAAAPQTG GMMLHGGAHL M

Best Arabidopsis Sequence Match ( AT1G21340.1 )
(BLAST)

001: MLPYIGHNSY QQHQFPLPEM EIPEKWKLSY EQEAITAPAC PRCASSNTKF CYYNNYSLSQ PRYFCKGCRR YWTKGGSLRN IPVGGGCRKR SRSRQNSHKR
101: FGRNENRPDG LINQDDGFQS SPPGSDIDLA AVFAQYVTDR SPSSTDNTTG SDQDSPITTT THALESLSWD ICQETDVDLG FYGEFNNLTQ KTKEDQEVFG
201: QFLQEDREEI FEFQGLLDDK EIQEILECSF SEEPDQLVSQ GSFMINGDNW SSTDLTRFGI

Arabidopsis Description

DOF1.2Dof zinc finger protein DOF1.2 [Source:UniProtKB/Swiss-Prot;Acc:P68349]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.