CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER99208
KXG31676
OQU80770
OQU83614

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G47500.1	OQU83614	AT1G68050.1	16002617
AT5G62430.1	KXG31676	AT1G22770.1	17872410
AT5G62430.1	OQU83614	AT1G68050.1	16002617
AT5G62430.1	EER99208	AT5G51910.1	21798944
AT5G62430.1	OQU80770	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027846_P001	Maize	nucleus	85.61	84.03
Os03t0169600-01	Rice	nucleus	76.42	73.64
TraesCS4D01G285100.1	Wheat	nucleus	73.35	70.36
TraesCS4A01G017700.1	Wheat	nucleus	72.41	70.25
TraesCS4B01G286400.1	Wheat	nucleus	71.7	70.21
HORVU4Hr1G074990.1	Barley	nucleus	73.11	70.14
EER91636	Sorghum	nucleus	55.42	49.37
AT5G62430.1	Thale cress	nucleus	29.72	42.28
CDY69084	Canola	nucleus	27.12	41.97
CDY00286	Canola	nucleus	26.89	41.76
CDY67518	Canola	nucleus	28.07	40.75
CDY69244	Canola	nucleus	27.83	40.41
Bra029261.1-P	Field mustard	nucleus	27.59	40.07
Bra010082.1-P	Field mustard	nucleus	24.76	39.18
VIT_17s0000g06310.t01	Wine grape	nucleus	40.8	36.58
VIT_01s0026g02580.t01	Wine grape	nucleus	41.04	36.48
CDY47405	Canola	nucleus	35.38	34.97
CDY66672	Canola	nucleus	34.91	34.66
Bra018141.1-P	Field mustard	nucleus	34.91	34.66
KRH03487	Soybean	nucleus	38.21	34.39
KRH56903	Soybean	nucleus	37.97	34.04
AT3G47500.1	Thale cress	nucleus	35.61	33.71
KRH18471	Soybean	nucleus	38.44	33.4
KRG93541	Soybean	nucleus	30.19	33.25
KRH54567	Soybean	nucleus	35.85	33.19
Solyc03g115940.2.1	Tomato	nucleus	38.92	32.93
KRH63324	Soybean	nucleus	36.32	32.77
PGSC0003DMT400050273	Potato	nucleus	38.68	32.6
OQU90492	Sorghum	nucleus	35.14	30.79
PGSC0003DMT400083080	Potato	nucleus	34.91	30.08
Solyc06g069760.2.1	Tomato	nucleus	34.67	29.88
OQU78298	Sorghum	mitochondrion, nucleus, plastid	14.39	28.24
EES02731	Sorghum	nucleus	36.56	27.68
EES00579	Sorghum	nucleus	32.55	26.95
OQU87316	Sorghum	nucleus	9.91	25.0
KXG33408	Sorghum	nucleus	14.86	24.23
EES13107	Sorghum	nucleus	12.5	23.66
OQU81009	Sorghum	nucleus	14.15	22.64
KXG31638	Sorghum	nucleus	12.5	22.55
OQU89656	Sorghum	nucleus	13.21	22.22
EES17301	Sorghum	nucleus	13.92	21.45
EER91220	Sorghum	plastid	16.04	19.37

Protein Annotations

MapMan:15.5.1.5	EntrezGene:8082122	ProteinID:AEF32404.1	UniProt:C5WWR6	ProteinID:DAA34026.1	EnsemblPlants:EER95426
ProteinID:EER95426	ProteinID:EER95426.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003851	PFAM:PD007478
PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884	PANTHER:PTHR31089	PANTHER:PTHR31089:SF3	EnsemblPlantsGene:SORBI_3001G489900
unigene:Sbi.667	UniParc:UPI000199D24F	RefSeq:XP_002468428.1	InterPro:Znf_Dof	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:-:76000137..76002917

Molecular Weight (calculated)

45173.1 Da

IEP (calculated)

8.422

GRAVY (calculated)

-0.619

Length

424 amino acids

Sequence
(BLAST)

001: MGEGRAGDGL IKLFGKTIPV PETPAAGDAA KDIQQSGSSG TTDLKGQENT LQDSTGSPPQ QEVADTEDSS AAKNSSADKQ QGEAANQKEK LKKPDKILPC
101: PRCNSMDTKF CYYNNYNINQ PRHFCKNCQR YWTAGGAMRN VPVGAGRRKS KSASAASHFL QRVRAALPMD PLCTAAKTNG TVLSFGSDMS SLDLTEQMKH
201: LKEKLIPIAG IKNGDERSVG SCTEGPAKAE DSNQKENVTA EKSAKLVQHP CMNGVAMWPF SCAPPPACYT PGSIAIPFYP APAAYWGCMV PGAWNAPWPP
301: QSPSETGSTL STASPASTKS NCFTPGKRPR DCNEEGDTKG NGKVWVPKTI RIDDVDEVAR SSILSLIGIN GDKAGKDGKG CKLARVFEQK EEARTATHSV
401: INGLPFLQGN PAALSRSLTF QEGS

Best Arabidopsis Sequence Match ( AT5G39660.3 )
(BLAST)

001: MADPAIKLFG KTIPLPELGV VDSSSSYTGF LTETQIPVRL SDSCTGDDDD EEMGDSGLGR EEGDDVGDGG GESETDKKEE KDSECQEESL RNESNDVTTT
101: TSGITEKTET TKAAKTNEES GGTACSQEGK LKKPDKILPC PRCNSMETKF CYYNNYNVNQ PRHFCKKCQR YWTAGGTMRN VPVGAGRRKN KSPASHYNRH
201: VSITSAEAMQ KVARTDLQHP NGANLLTFGS DSVLCESMAS GLNLVEKSLL KTQTVLQEPN EGLKITVPLN QTNEEAGTVS PLPKVPCFPG PPPTWPYAWN
301: GVSWTILPFY PPPAYWSCPG VSPGAWNSFT WMPQPNSPSG SNPNSPTLGK HSRDENAAEP GTAFDETESL GREKSKPERC LWVPKTLRID DPEEAAKSSI
401: WETLGIKKDE NADTFGAFRS STKEKSSLSE GRLPGRRPEL QANPAALSRS ANFHESS

Arabidopsis Description

CDF2Cyclic dof factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZL5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.