CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER91220	Sorghum	plastid	42.91	33.62
OQU87316	Sorghum	nucleus	19.27	31.55
OQU81009	Sorghum	nucleus	26.55	27.55
OQU89656	Sorghum	nucleus	24.73	26.98
GSMUA_Achr2P13350_001	Banana	nucleus	21.45	25.43
EES13107	Sorghum	nucleus	18.91	23.21
KXG31638	Sorghum	nucleus	16.73	19.57
OQU78298	Sorghum	mitochondrion, nucleus, plastid	15.27	19.44
KXG33408	Sorghum	nucleus	16.36	17.31
EER95426	Sorghum	nucleus	21.45	13.92
EER91636	Sorghum	nucleus	21.82	12.61
OQU90492	Sorghum	nucleus	20.0	11.36
EES00579	Sorghum	nucleus	20.36	10.94
EES02731	Sorghum	nucleus	21.82	10.71

Protein Annotations

MapMan:15.5.1.5	EntrezGene:8074824	ProteinID:AEF32402.1	UniProt:C5YQW3	ProteinID:DAA34030.1	EnsemblPlants:EES17301
ProteinID:EES17301	ProteinID:EES17301.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003851	PFAM:PD007478
PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884	PANTHER:PTHR31992	PANTHER:PTHR31992:SF81	EnsemblPlantsGene:SORBI_3008G148101
UniParc:UPI0001A880D5	RefSeq:XP_002443463.1	InterPro:Znf_Dof	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr8:-:58151258..58152085

Molecular Weight (calculated)

28035.5 Da

IEP (calculated)

9.987

GRAVY (calculated)

-0.044

Length

275 amino acids

Sequence
(BLAST)

001: MEAPLHQFPV PPPLPQDALL RQQAVAARAL MVAATAGNKA AGREQCPRCA SRDTKFCYYN NYNTAQPRHF CRACRRYWTL GGSLRNVPVG GSTRKRPRPR
101: PARHTRAMAA AAFGAAAMAT PSTTTTASDG GSPFASPATF QGVGGGGGLL LSSLLLGSVS ASSSASPLLA LGAAPLLEGR LGFDLGFGDA ALGGGGGGGA
201: HAADLPHHHQ LPLGGGPPLL PWPAATTRIL EGDRAETTTV FPFPPAGAVW QELAATAPVV EAAGLHHGGA PHLLL

Best Arabidopsis Sequence Match ( AT1G21340.1 )
(BLAST)

001: MLPYIGHNSY QQHQFPLPEM EIPEKWKLSY EQEAITAPAC PRCASSNTKF CYYNNYSLSQ PRYFCKGCRR YWTKGGSLRN IPVGGGCRKR SRSRQNSHKR
101: FGRNENRPDG LINQDDGFQS SPPGSDIDLA AVFAQYVTDR SPSSTDNTTG SDQDSPITTT THALESLSWD ICQETDVDLG FYGEFNNLTQ KTKEDQEVFG
201: QFLQEDREEI FEFQGLLDDK EIQEILECSF SEEPDQLVSQ GSFMINGDNW SSTDLTRFGI

Arabidopsis Description

DOF1.2Dof zinc finger protein DOF1.2 [Source:UniProtKB/Swiss-Prot;Acc:P68349]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.