CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
nucleus 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d001824_P001	Maize	nucleus	75.0	82.35
Zm00001d026628_P001	Maize	nucleus, plastid	75.0	79.62
Os04t0678400-01	Rice	plastid	62.5	67.96
TraesCS2B01G592600.1	Wheat	nucleus	46.43	55.91
TraesCS2D01G563000.1	Wheat	nucleus, plastid	53.12	54.84
TraesCS2A01G590700.1	Wheat	nucleus	49.11	54.73
TraesCS2A01G591100.1	Wheat	nucleus, plastid	50.45	53.55
TraesCS2B01G592800.1	Wheat	nucleus, plastid	50.0	52.83
TraesCS2B01G592700.1	Wheat	nucleus	52.23	52.7
TraesCS2D01G563400.1	Wheat	nucleus	48.66	52.66
TraesCS2D01G563200.1	Wheat	plastid	51.79	52.49
TraesCS2B01G592900.1	Wheat	nucleus	47.77	51.69
TraesCS2A01G591200.1	Wheat	nucleus, plastid	48.66	50.93
HORVU2Hr1G119110.3	Barley	nucleus	48.21	50.7
TraesCS2A01G590800.1	Wheat	plastid	49.55	50.68
TraesCS2D01G563100.1	Wheat	nucleus	48.66	48.44
HORVU2Hr1G119160.3	Barley	nucleus, plastid	44.2	47.6
TraesCS2A01G591000.1	Wheat	mitochondrion, nucleus	50.0	44.98
KXG31638	Sorghum	nucleus	24.55	23.4
OQU87316	Sorghum	nucleus	16.96	22.62
GSMUA_Achr6P29500_001	Banana	nucleus	22.32	20.92
OQU78298	Sorghum	mitochondrion, nucleus, plastid	18.75	19.44
EES17301	Sorghum	nucleus	23.21	18.91
KXG33408	Sorghum	nucleus	19.64	16.92
OQU89656	Sorghum	nucleus	18.75	16.67
OQU81009	Sorghum	nucleus	19.64	16.6
EER91220	Sorghum	plastid	23.66	15.1
EER95426	Sorghum	nucleus	23.66	12.5
OQU90492	Sorghum	nucleus	21.88	10.12
EER91636	Sorghum	nucleus	21.43	10.08
EES00579	Sorghum	nucleus	22.77	9.96
EES02731	Sorghum	nucleus	24.11	9.64

Protein Annotations

MapMan:15.5.1.5	EntrezGene:8076466	UniProt:C5YAJ6	ProteinID:DAA34024.1	EnsemblPlants:EES13107	ProteinID:EES13107
ProteinID:EES13107.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003851	PFAM:PD007478	PFAM:PF02701
ScanProsite:PS01361	PFscan:PS50884	PANTHER:PTHR31992	PANTHER:PTHR31992:SF31	EnsemblPlantsGene:SORBI_3006G267900	UniParc:UPI0001A875F7
RefSeq:XP_002448779.1	InterPro:Znf_Dof	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:60103962..60105483

Molecular Weight (calculated)

23266.8 Da

IEP (calculated)

7.773

GRAVY (calculated)

-0.348

Length

224 amino acids

Sequence
(BLAST)

001: MAPAASILSA TAAAAGASKR PADSDAELSL DSSALQQQGD EAVRKGRQTR QQQQLECPRC RSTNTKFCYY NNYSTAQPRH FCRACRRYWT HGGTLRDVPV
101: GGASRRSSGG GGKRRRVSAE PSSAASSSPP PLPAASLADA CLPDLTSAFP FLSDGSFFPQ FDVGSGVALA PAAFSSSWQS VVPDFYDGLA PWDDGAAAGT
201: AAGGFVGAWG DIAGLDLSWT PPGN

Best Arabidopsis Sequence Match ( AT5G66940.1 )
(BLAST)

001: MPSEFSESRR VPKIPHGQGG SVAIPTDQQE QLSCPRCEST NTKFCYYNNY NFSQPRHFCK SCRRYWTHGG TLRDIPVGGV SRKSSKRSRT YSSAATTSVV
101: GSRNFPLQAT PVLFPQSSSN GGITTAKGSA SSFYGGFSSL INYNAAVSRN GPGGGFNGPD AFGLGLGHGS YYEDVRYGQG ITVWPFSSGA TDAATTTSHI
201: AQIPATWQFE GQESKVGFVS GDYVA

Arabidopsis Description

DOF5.8Dof zinc finger protein DOF5.8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGD6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.