CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d005970_P001	Maize	nucleus	73.81	76.23
Zm00001d020837_P001	Maize	nucleus	78.57	74.72
OQU81009	Sorghum	nucleus	50.0	47.55
OQU87316	Sorghum	nucleus	18.25	27.38
EES17301	Sorghum	nucleus	26.98	24.73
EER91220	Sorghum	plastid	28.17	20.23
OQU78298	Sorghum	mitochondrion, nucleus, plastid	17.06	19.91
KXG31638	Sorghum	nucleus	17.86	19.15
EES13107	Sorghum	nucleus	16.67	18.75
KXG33408	Sorghum	nucleus	17.46	16.92
OQU90492	Sorghum	nucleus	25.4	13.22
EER95426	Sorghum	nucleus	22.22	13.21
EER91636	Sorghum	nucleus	22.62	11.97
EES02731	Sorghum	nucleus	24.6	11.07
EES00579	Sorghum	nucleus	18.65	9.18

Protein Annotations

MapMan:15.5.1.5	EntrezGene:8063745	UniProt:C5X346	ProteinID:DAA34010.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003851	EnsemblPlants:OQU89656	ProteinID:OQU89656	ProteinID:OQU89656.1	PFAM:PD007478	PFAM:PF02701
ScanProsite:PS01361	PFscan:PS50884	PANTHER:PTHR31992	PANTHER:PTHR31992:SF67	EnsemblPlantsGene:SORBI_3002G236600	UniParc:UPI0001A836AE
RefSeq:XP_002460395.1	InterPro:Znf_Dof	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:62729069..62730272

Molecular Weight (calculated)

25794.0 Da

IEP (calculated)

9.463

GRAVY (calculated)

-0.499

Length

252 amino acids

Sequence
(BLAST)

001: MQEHGRRPVT PFAGVDLRRP KGYPAPAAVA AAKEAAPARA PVVGDPCPRC GARDTKFCYY NNYNTSQPRH FCKSCRRYWT KGGSLRNVPV GGGTRKSSSS
101: STSSPSATTS ASPGGAAPKN TKRSKNSKRR RVAPAPDPAA PGTDAPTVTA TATADVANTA PSTEAAAATV AASEKPVTMT EEEPAAAVVV ATETKPPAAP
201: GLGLADAGSG GGGKELLPDP SHFEWPSGCD LGSYWGTSVF ADTDPALFLN LP

Best Arabidopsis Sequence Match ( AT1G51700.1 )
(BLAST)

001: MQDLTSAAAY YHQSMMMTTA KQNQPELPEQ EQLKCPRCDS PNTKFCYYNN YNLSQPRHFC KNCRRYWTKG GALRNIPVGG GTRKSNKRSG SSPSSNLKNQ
101: TVAEKPDHHG SGSEEKEERV SGQEMNPTRM LYGLPVGDPN GASFSSLLAS NMQMGGLVYE SGSRWLPGMD LGLGSVRRSD DTWTDLAMNR MEKN

Arabidopsis Description

DOF1.7Dof zinc finger protein DOF1.7 [Source:UniProtKB/Swiss-Prot;Acc:O82155]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.