CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d040455_P001	Maize	nucleus	89.06	88.89
KRH42862	Soybean	nucleus	8.98	58.97
TraesCS3D01G193100.1	Wheat	nucleus	51.56	55.46
TraesCS3A01G189600.1	Wheat	nucleus	50.98	54.83
Os01t0277500-01	Rice	nucleus	51.76	47.83
Bra030124.1-P	Field mustard	nucleus	11.13	46.72
VIT_10s0003g01260.t01	Wine grape	nucleus	14.45	46.54
CDY71347	Canola	nucleus	11.52	44.7
KRH58964	Soybean	nucleus	14.06	43.64
KRH21283	Soybean	nucleus	12.11	42.18
PGSC0003DMT400087458	Potato	nucleus	13.28	41.21
KRH11011	Soybean	nucleus	12.3	41.18
Solyc02g076850.1.1	Tomato	nucleus	13.09	41.1
AT1G29160.1	Thale cress	nucleus	13.67	40.0
CDX99791	Canola	nucleus	13.48	39.88
CDY50789	Canola	nucleus	13.48	39.43
Bra032292.1-P	Field mustard	nucleus	13.48	39.43
AT2G34140.1	Thale cress	nucleus	13.09	39.41
CDY43321	Canola	nucleus	13.28	39.08
CDX90171	Canola	nucleus	13.28	39.08
Bra010848.1-P	Field mustard	nucleus	13.28	38.86
CDY37670	Canola	nucleus	12.7	38.69
Bra021895.1-P	Field mustard	nucleus	12.5	38.1
CDY15647	Canola	nucleus	13.09	37.85
CDY67393	Canola	nucleus	12.5	37.65
VIT_08s0056g01230.t01	Wine grape	nucleus	35.35	36.64
Solyc02g067230.2.1	Tomato	nucleus	31.84	34.9
PGSC0003DMT400064695	Potato	nucleus	31.64	34.84
KRH64974	Soybean	nucleus	29.69	32.97
EER95426	Sorghum	nucleus	26.95	32.55
KRG94921	Soybean	nucleus	30.66	32.51
EES02731	Sorghum	nucleus	35.55	32.5
OQU90492	Sorghum	nucleus	30.47	32.23
KRH44749	Soybean	nucleus	27.15	32.03
OQU78298	Sorghum	mitochondrion, nucleus, plastid	12.89	30.56
Solyc02g088070.2.1	Tomato	nucleus	27.34	30.3
KRH13096	Soybean	nucleus, vacuole	27.34	30.04
PGSC0003DMT400003359	Potato	nucleus	27.73	29.16
EER91636	Sorghum	nucleus	26.17	28.15
OQU87316	Sorghum	nucleus	8.98	27.38
KXG33408	Sorghum	nucleus	12.89	25.38
EES13107	Sorghum	nucleus	9.96	22.77
KXG31638	Sorghum	nucleus	9.38	20.43
EES17301	Sorghum	nucleus	10.94	20.36
OQU81009	Sorghum	nucleus	10.16	19.62
OQU89656	Sorghum	nucleus	9.18	18.65
EER91220	Sorghum	plastid	12.7	18.52

Protein Annotations

MapMan:15.5.1.5	EntrezGene:8054666	UniProt:C5XH96	ProteinID:DAA34017.1	EnsemblPlants:EES00579	ProteinID:EES00579
ProteinID:EES00579.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003851	PFAM:PD007478	PFAM:PF02701
ScanProsite:PS01361	PFscan:PS50884	PANTHER:PTHR31089	PANTHER:PTHR31089:SF13	EnsemblPlantsGene:SORBI_3003G131100	UniParc:UPI0001A84368
RefSeq:XP_002455459.1	InterPro:Znf_Dof	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:12299512..12303903

Molecular Weight (calculated)

54774.4 Da

IEP (calculated)

9.149

GRAVY (calculated)

-0.598

Length

512 amino acids

Sequence
(BLAST)

001: MAAPGGGLDQ DRGRGRGQDA AIKLFGRSIP VLHSSVVAAA ASEVSTKLAN DVRSNDGMSC LPNMPLIVKA SPFPSKNNMK NGLQAISSQH GKMEADSKSE
101: EVKNSLQAII SQPGKTDDSK SEETKTESGG SGQEKVLKKP DKILPCPRCH SMETKFCYFN NYNVNQPRHF CRNCKRYWTA GGTMRNVPIG SGRRRNKDPS
201: HHHHVTKPCD HIVTANGDVS DATQRQSLAV KPSVLQGSGK QNETACKSVS PVLNIKEQNN ADLISLVSGD NKEEKSCASS VVSGSSENWM PENTVKKEED
301: STSAYGNGVK EPDPNTQSHH AGPISVFSGN PAAVMVTNQS SADGIHGPGN GTVSPLSLPP PPMVPTPGIC APAVPFPLVP AFVSCIPGWP SAVWGAAWPG
401: SSGPTLLSLP PNSLAFSGSN SRVLGKHTRV ANLQEEQKAE KKFWVPKALR IDNPEEAAKS SIWASLGIKP DERIIFKSFQ SKDLKNSETK TPESLQANPA
501: AFSRSQTFQE RT

Best Arabidopsis Sequence Match ( AT5G39660.3 )
(BLAST)

001: MADPAIKLFG KTIPLPELGV VDSSSSYTGF LTETQIPVRL SDSCTGDDDD EEMGDSGLGR EEGDDVGDGG GESETDKKEE KDSECQEESL RNESNDVTTT
101: TSGITEKTET TKAAKTNEES GGTACSQEGK LKKPDKILPC PRCNSMETKF CYYNNYNVNQ PRHFCKKCQR YWTAGGTMRN VPVGAGRRKN KSPASHYNRH
201: VSITSAEAMQ KVARTDLQHP NGANLLTFGS DSVLCESMAS GLNLVEKSLL KTQTVLQEPN EGLKITVPLN QTNEEAGTVS PLPKVPCFPG PPPTWPYAWN
301: GVSWTILPFY PPPAYWSCPG VSPGAWNSFT WMPQPNSPSG SNPNSPTLGK HSRDENAAEP GTAFDETESL GREKSKPERC LWVPKTLRID DPEEAAKSSI
401: WETLGIKKDE NADTFGAFRS STKEKSSLSE GRLPGRRPEL QANPAALSRS ANFHESS

Arabidopsis Description

CDF2Cyclic dof factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZL5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.