CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d040362_P001	Maize	nucleus	83.93	82.17
TraesCS3B01G210300.1	Wheat	nucleus	68.57	71.24
TraesCS3A01G180600.1	Wheat	nucleus	67.68	70.32
TraesCS3D01G185500.2	Wheat	nucleus	67.5	70.26
Os01t0264000-01	Rice	nucleus	58.75	66.33
GSMUA_Achr9P05020_001	Banana	nucleus	37.32	63.72
OQU90492	Sorghum	nucleus	36.43	42.15
KRH74885	Soybean	nucleus	32.32	37.79
KRH50577	Soybean	nucleus	32.14	37.58
KRH70746	Soybean	nucleus, plastid	32.5	37.53
EER95426	Sorghum	nucleus	27.68	36.56
KRG89621	Soybean	nucleus	31.43	36.51
EES00579	Sorghum	nucleus	32.5	35.55
CDX95919	Canola	nucleus	22.32	33.97
CDY01768	Canola	nucleus	22.32	33.97
CDY16193	Canola	nucleus	19.82	33.95
Bra024683.1-P	Field mustard	nucleus	19.82	33.95
CDY67869	Canola	nucleus	23.21	33.77
EER91636	Sorghum	nucleus	28.57	33.61
Bra003994.1-P	Field mustard	nucleus	22.86	33.16
CDY07344	Canola	nucleus	22.86	33.16
CDY72477	Canola	nucleus	21.79	33.15
Bra004396.1-P	Field mustard	nucleus	21.79	33.15
GSMUA_Achr2P11520_001	Banana	nucleus	27.14	32.69
AT1G69570.1	Thale cress	nucleus	23.21	32.58
OQU78298	Sorghum	mitochondrion, nucleus, plastid	11.79	30.56
AT1G26790.1	Thale cress	nucleus, plastid	20.0	30.11
CDY44994	Canola	nucleus	14.29	29.63
CDY50735	Canola	extracellular	19.11	29.4
Bra016286.1-P	Field mustard	nucleus	16.79	28.06
CDY50734	Canola	nucleus	13.57	28.04
CDY46443	Canola	nucleus	16.61	27.76
OQU87316	Sorghum	nucleus	8.21	27.38
KXG33408	Sorghum	nucleus	11.79	25.38
OQU81009	Sorghum	nucleus	11.79	24.91
OQU89656	Sorghum	nucleus	11.07	24.6
EES13107	Sorghum	nucleus	9.64	24.11
EES17301	Sorghum	nucleus	10.71	21.82
KXG31638	Sorghum	nucleus	8.39	20.0
EER91220	Sorghum	plastid	11.25	17.95

Protein Annotations

MapMan:15.5.1.5	EntrezGene:8085828	UniProt:C5XGH6	EnsemblPlants:EES02731	ProteinID:EES02731	ProteinID:EES02731.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR003851	PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361
PFscan:PS50884	PANTHER:PTHR31089	EnsemblPlantsGene:SORBI_3003G121400	UniParc:UPI0001A84EA1	RefSeq:XP_002457611.1	InterPro:Znf_Dof
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:11065634..11069607

Molecular Weight (calculated)

61406.6 Da

IEP (calculated)

4.905

GRAVY (calculated)

-0.884

Length

560 amino acids

Sequence
(BLAST)

001: MSDQKDPGIK LFGRVIPLEP EPAPGTTEAE DPPPSHDQPP DELQPRAPEL AAAADEDQHN EKEEKPASEM VNMPQEKDKE IKVDTPQVEK DNEMKVDAPQ
101: KEHDDEMKID AQQEKKDEQM EVNGSPMHEN IEPANLPPSE HKKEDEDLMN STEDKAASDP KGENEKTSNE ESGQDKALKK PDKILPCPRC NSMDTKFCYY
201: NNYNVNQPRH FCKNCQRYWT AGGTMRNVPV GAGRRKSKNS SLHYRQLLMA PDCMLGSRVD ISKSVLPEAL VSPPAPIQPT SRNETVLKFG PEVPLCESMV
301: SALNIDEQNV NNSGSAPRGE NREDNPGPGT SYNGVPENMV HVDKNGAPVH CNGVAPVPQY YLGTPFMYPW NVGWNNVPVM APGKSMPESA PASASESCST
401: SSALWMNSPM IPASRFPSPA FPYPLVPPAL WGCLSGWPVT TWNIPWIRAN GCVSPSSSSN SSCSGNGSPT LGKHSRDSNP MKEEKREKSL WVPKTLRIDD
501: PDEAAKSSIW ATLGIKPGDP GTFKPFQSKV ESKGQRSDAA QVLQANPAAL SRSQTFQESS

Best Arabidopsis Sequence Match ( AT5G39660.3 )
(BLAST)

001: MADPAIKLFG KTIPLPELGV VDSSSSYTGF LTETQIPVRL SDSCTGDDDD EEMGDSGLGR EEGDDVGDGG GESETDKKEE KDSECQEESL RNESNDVTTT
101: TSGITEKTET TKAAKTNEES GGTACSQEGK LKKPDKILPC PRCNSMETKF CYYNNYNVNQ PRHFCKKCQR YWTAGGTMRN VPVGAGRRKN KSPASHYNRH
201: VSITSAEAMQ KVARTDLQHP NGANLLTFGS DSVLCESMAS GLNLVEKSLL KTQTVLQEPN EGLKITVPLN QTNEEAGTVS PLPKVPCFPG PPPTWPYAWN
301: GVSWTILPFY PPPAYWSCPG VSPGAWNSFT WMPQPNSPSG SNPNSPTLGK HSRDENAAEP GTAFDETESL GREKSKPERC LWVPKTLRID DPEEAAKSSI
401: WETLGIKKDE NADTFGAFRS STKEKSSLSE GRLPGRRPEL QANPAALSRS ANFHESS

Arabidopsis Description

CDF2Cyclic dof factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZL5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.