CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G271700.1	Wheat	nucleus	56.55	61.29
TraesCS3D01G271300.1	Wheat	nucleus	54.76	60.53
TraesCS3B01G305400.1	Wheat	nucleus	54.76	59.74
HORVU3Hr1G061840.2	Barley	nucleus, plastid	58.33	58.68
Zm00001d043904_P001	Maize	nucleus	72.02	52.84
Os01t0673700-00	Rice	nucleus	60.12	30.7
OQU78298	Sorghum	mitochondrion, nucleus, plastid	29.76	23.15
EES17301	Sorghum	nucleus	31.55	19.27
KXG33408	Sorghum	nucleus	29.17	18.85
OQU89656	Sorghum	nucleus	27.38	18.25
EES13107	Sorghum	nucleus	22.62	16.96
OQU81009	Sorghum	nucleus	25.6	16.23
KXG31638	Sorghum	nucleus	20.24	14.47
EER91220	Sorghum	plastid	28.57	13.68
EER95426	Sorghum	nucleus	25.0	9.91
EER91636	Sorghum	nucleus	27.98	9.87
EES00579	Sorghum	nucleus	27.38	8.98
EES02731	Sorghum	nucleus	27.38	8.21
OQU90492	Sorghum	nucleus	22.02	7.64

Protein Annotations

MapMan:15.5.1.5	UniProt:A0A1W0VYW0	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003851	EnsemblPlants:OQU87316
ProteinID:OQU87316	ProteinID:OQU87316.1	PFAM:PD007478	PFAM:PF02701	PFscan:PS50884	PANTHER:PTHR31089
PANTHER:PTHR31089:SF5	EnsemblPlantsGene:SORBI_3003G253200	UniParc:UPI0009DC8E15	InterPro:Znf_Dof	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:+:59194939..59195454

Molecular Weight (calculated)

17252.4 Da

IEP (calculated)

10.717

GRAVY (calculated)

-0.550

Length

168 amino acids

Sequence
(BLAST)

001: MASHLPDADA AGFKLFGKVI QPPDAHHRAA DEGGAPPQLP PPTTALPPPP PPPPSPPLPP QPPLPLQQQA TGATGGTSGG GGEPLPCPRR ETKFCYFNNY
101: NVRQPRHLCR ACRRYWTAGG ALRRVASASP GRRRPRPTTA RSVAAAAAAA AAASSAAAAA AEEVGGER

Best Arabidopsis Sequence Match ( AT3G47500.1 )
(BLAST)

001: MMMETRDPAI KLFGMKIPFP SVFESAVTVE DDEEDDWSGG DDKSPEKVTP ELSDKNNNNC NDNSFNNSKP ETLDKEEATS TDQIESSDTP EDNQQTTPDG
101: KTLKKPTKIL PCPRCKSMET KFCYYNNYNI NQPRHFCKAC QRYWTAGGTM RNVPVGAGRR KNKSSSSHYR HITISEALEA ARLDPGLQAN TRVLSFGLEA
201: QQQHVAAPMT PVMKLQEDQK VSNGARNRFH GLADQRLVAR VENGDDCSSG SSVTTSNNHS VDESRAQSGS VVEAQMNNNN NNNMNGYACI PGVPWPYTWN
301: PAMPPPGFYP PPGYPMPFYP YWTIPMLPPH QSSSPISQKC SNTNSPTLGK HPRDEGSSKK DNETERKQKA GCVLVPKTLR IDDPNEAAKS SIWTTLGIKN
401: EAMCKAGGMF KGFDHKTKMY NNDKAENSPV LSANPAALSR SHNFHEQI

Arabidopsis Description

CDF3Cyclic dof factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8LFV3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.