CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER99208
KXG31676
OQU80770
OQU83614

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G47500.1	OQU83614	AT1G68050.1	16002617
AT5G62430.1	KXG31676	AT1G22770.1	17872410
AT5G62430.1	OQU83614	AT1G68050.1	16002617
AT5G62430.1	EER99208	AT5G51910.1	21798944
AT5G62430.1	OQU80770	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022525_P001	Maize	nucleus	85.95	80.78
Os07t0685000-02	Rice	nucleus	72.93	74.16
HORVU2Hr1G017290.1	Barley	nucleus	68.59	69.89
TraesCS2A01G100800.1	Wheat	nucleus	69.01	69.73
TraesCS2B01G118000.1	Wheat	nucleus	68.39	69.1
TraesCS2D01G100300.1	Wheat	mitochondrion, nucleus	69.21	66.87
CDY00286	Canola	nucleus	25.21	44.69
Bra010082.1-P	Field mustard	nucleus	24.59	44.4
CDY69084	Canola	nucleus	25.0	44.16
AT5G62430.1	Thale cress	nucleus	27.07	43.96
CDY67518	Canola	nucleus	26.03	43.15
CDY69244	Canola	nucleus	25.83	42.81
Bra029261.1-P	Field mustard	nucleus	25.41	42.12
CDY66672	Canola	nucleus	34.71	39.34
Bra018141.1-P	Field mustard	nucleus	34.71	39.34
CDY47405	Canola	nucleus	34.71	39.16
VIT_17s0000g06310.t01	Wine grape	nucleus	37.6	38.48
AT3G47500.1	Thale cress	nucleus	34.71	37.5
KRH56903	Soybean	nucleus	36.57	37.42
KRH03487	Soybean	nucleus	36.16	37.16
KRH54567	Soybean	nucleus	34.5	36.46
EES02731	Sorghum	nucleus	42.15	36.43
KRH63324	Soybean	nucleus	34.92	35.96
VIT_01s0026g02580.t01	Wine grape	nucleus	35.33	35.85
EER95426	Sorghum	nucleus	30.79	35.14
KRH18471	Soybean	nucleus	34.71	34.43
PGSC0003DMT400050273	Potato	nucleus	35.12	33.8
Solyc03g115940.2.1	Tomato	nucleus	34.71	33.53
Solyc06g069760.2.1	Tomato	nucleus	33.47	32.93
PGSC0003DMT400083080	Potato	nucleus	33.47	32.93
KRG93541	Soybean	nucleus	25.41	31.95
EES00579	Sorghum	nucleus	32.23	30.47
EER91636	Sorghum	nucleus	29.96	30.46
OQU89656	Sorghum	nucleus	13.22	25.4
OQU78298	Sorghum	mitochondrion, nucleus, plastid	10.95	24.54
KXG33408	Sorghum	nucleus	11.98	22.31
OQU87316	Sorghum	nucleus	7.64	22.02
EES13107	Sorghum	nucleus	10.12	21.88
OQU81009	Sorghum	nucleus	11.78	21.51
KXG31638	Sorghum	nucleus	10.12	20.85
EES17301	Sorghum	nucleus	11.36	20.0
EER91220	Sorghum	plastid	11.57	15.95

Protein Annotations

MapMan:15.5.1.5	UniProt:A0A1W0W7Y2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003851	EnsemblPlants:OQU90492
ProteinID:OQU90492	ProteinID:OQU90492.1	PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884
PANTHER:PTHR31089	PANTHER:PTHR31089:SF6	EnsemblPlantsGene:SORBI_3002G421900	UniParc:UPI0001FCCC52	InterPro:Znf_Dof	SEG:seg

Description

hypothetical protein

Coordinates

chr2:-:76930850..76934577

Molecular Weight (calculated)

51630.2 Da

IEP (calculated)

6.734

GRAVY (calculated)

-0.599

Length

484 amino acids

Sequence
(BLAST)

001: MELAGAASPR PPPESHVATP RPPPQPPEKD VCEDREDMRV TGEKPCTHQE LDVDQTNSSS SFNNSSECEN LAPSNDEISG SESNLEIAKT EGDVPSGEKV
101: LKKPDKILPC PRCNSMDTKF CYYNNYNIKQ PRHFCKSCQR YWTAGGSMRN IPVGAGRRKS KSSSANCRSI LIPGSSVATP GGEASLFPLS INGNQAAVSF
201: GPDSPLCNSM ASVLKIGGEQ IKSSNPASAA QPRNGENQMC PPCTTSSDGP RNESQKETAN AHQNGIIGQS NGVTSVHPIP FFPGPPFVYP WSPAWNGIPT
301: MAAAVCPAPA EAANSSENCT TSSNVQWNVP PIVPVLPPGF CGPIPVPVMP PSVWPFITPW PNGAWNAPWL GPSSTVPSSS PTSSSTCSES GSPVLGKHSR
401: DSKPQGDEKA ERCLWIPKTL RIDDPVEAAK SSIWTTLGIE PGDRGMFRPF QSKPERQEQI SGAARALQAN PAALSRSRSF QETT

Best Arabidopsis Sequence Match ( AT3G47500.1 )
(BLAST)

001: MMMETRDPAI KLFGMKIPFP SVFESAVTVE DDEEDDWSGG DDKSPEKVTP ELSDKNNNNC NDNSFNNSKP ETLDKEEATS TDQIESSDTP EDNQQTTPDG
101: KTLKKPTKIL PCPRCKSMET KFCYYNNYNI NQPRHFCKAC QRYWTAGGTM RNVPVGAGRR KNKSSSSHYR HITISEALEA ARLDPGLQAN TRVLSFGLEA
201: QQQHVAAPMT PVMKLQEDQK VSNGARNRFH GLADQRLVAR VENGDDCSSG SSVTTSNNHS VDESRAQSGS VVEAQMNNNN NNNMNGYACI PGVPWPYTWN
301: PAMPPPGFYP PPGYPMPFYP YWTIPMLPPH QSSSPISQKC SNTNSPTLGK HPRDEGSSKK DNETERKQKA GCVLVPKTLR IDDPNEAAKS SIWTTLGIKN
401: EAMCKAGGMF KGFDHKTKMY NNDKAENSPV LSANPAALSR SHNFHEQI

Arabidopsis Description

CDF3Cyclic dof factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8LFV3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.