CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER95426
EES05438
EES06943
KXG26327
KXG31676
OQU90492

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68050.1	KXG31676	AT1G22770.1	17704763
AT1G68050.1	KXG31676	AT1G22770.1	17872410
AT1G68050.1	EER95426	AT3G47500.1	16002617
AT1G68050.1	OQU90492	AT3G47500.1	16002617
AT1G68050.1	EES06943	AT5G08590.1	14749489
AT1G68050.1	KXG26327	AT5G08590.1	14749489
AT1G68050.1	EES06943	AT5G08590.1	17872410
AT1G68050.1	KXG26327	AT5G08590.1	17872410
AT1G68050.1	EES06943	AT5G08590.1	21798944
AT1G68050.1	KXG26327	AT5G08590.1	21798944
AT1G68050.1	EES05438	AT5G61380.1	14654842
AT1G68050.1	EER95426	AT5G62430.1	16002617
AT1G68050.1	OQU90492	AT5G62430.1	16002617

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007445_P001	Maize	cytosol	91.41	89.16
Zm00001d053091_P001	Maize	cytosol	91.58	88.03
Os11t0547000-01	Rice	cytosol	89.56	84.44
TraesCS4B01G157500.1	Wheat	cytosol	84.34	80.81
TraesCS4A01G164000.1	Wheat	cytosol	84.34	80.03
GSMUA_Achr7P11200_001	Banana	cytosol	71.04	73.78
KRH60424	Soybean	cytosol	73.74	70.65
VIT_01s0011g05810.t01	Wine grape	cytosol	73.23	70.62
AT1G68050.1	Thale cress	cytosol	71.89	68.98
KRH41723	Soybean	cytosol, extracellular, nucleus	73.91	67.85
PGSC0003DMT400051416	Potato	cytosol	70.88	66.4
Solyc01g005300.2.1	Tomato	cytosol	64.98	63.59
EES04532	Sorghum	cytosol	64.14	62.25
EER90290	Sorghum	cytosol	65.15	61.33
OQU80127	Sorghum	cytosol, nucleus, peroxisome	17.85	20.54

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.4	Gene3D:2.120.10.80	MapMan:26.1.2.3.1	Gene3D:3.30.450.20	UniProt:A0A1Z5RIQ1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0006139	GO:GO:0006355	GO:GO:0007275	GO:GO:0007623	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009628	GO:GO:0009637	GO:GO:0009791	GO:GO:0009908	GO:GO:0009911
GO:GO:0009987	GO:GO:0010468	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR000014	InterPro:IPR001810	InterPro:IPR015915
InterPro:Kelch-typ_b-propeller	InterPro:Kelch_2	EnsemblPlants:OQU83614	ProteinID:OQU83614	ProteinID:OQU83614.1	InterPro:PAS
InterPro:PAS-like_dom_sf	PFAM:PF00646	PFAM:PF07646	PFAM:PF13415	PFAM:PF13418	PFAM:PF13426
PFscan:PS50112	PANTHER:PTHR23244	PANTHER:PTHR23244:SF263	EnsemblPlantsGene:SORBI_3005G145300	SUPFAM:SSF50965	SUPFAM:SSF55785
SUPFAM:SSF81383	TIGRFAMs:TIGR00229	UniParc:UPI000B8BAC63	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr5:-:61047437..61051332

Molecular Weight (calculated)

65250.7 Da

IEP (calculated)

6.597

GRAVY (calculated)

-0.188

Length

594 amino acids

Sequence
(BLAST)

001: MEVDAEAGWP QWGAPAAAAA AGLGEPRAAA IVVADASEVD FPVIYVNAAF EAATGYRAHE VLGRNCRFLQ FRDPRAQRRH PLVDPMVVSE IRRCLNEGIE
101: FQGELLNFRK DGAPLYNRLR LIPMHGDDGY VTHVIGIQLF SDANIDLSSV SYPVYKQQSN RLSIQDLNSA SHEHAPKIQS SDHCAIFQLS DEVLAHNILS
201: RLSPRDVASI GSVCTRMHEL TKNNHLRKMV CQNAWGRDVT VRLEMSTKMV GWGRLARELT TLEAASWRKF TVGGRVEPSR CNFSACAVGN RLVLFGGEGV
301: NMQPMDDTFV LNLEAARPEW RRVKVSASPP GRWGHTLSWL NGSWLVVFGG CGQQGLLNDV FVLDLDAQQP TWREVASEAP PLPRSWHSSC TLDGSKLVVS
401: GGCTESGVLL SDTFLLDLTK EKPAWREIPT SWSPPSRLGH TMSVYGTTKL FMFGGLAKSG SLRLRSSDAY SIDVSEDSPQ WRQLATTGFP NVGPPPRLDH
501: VAVSLPCGRI IIFGGSIAGL HSPAQLFLID PAEEKPTWRI LNVPGQPPKF AWGHSTCVVG GTRVLVLGGH TGEEWILNEL HELCLASRPD EDDD

Best Arabidopsis Sequence Match ( AT1G68050.1 )
(BLAST)

001: MAREHAIGEA TGKRKKRGRV EEAEEYCNDG IEEQVEDEKL PLEVGMFYYP MTPPSFIVSD ALEPDFPLIY VNRVFEVFTG YRADEVLGRN CRFLQYRDPR
101: AQRRHPLVDP VVVSEIRRCL EEGIEFQGEL LNFRKDGTPL VNRLRLAPIR DDDGTITHVI GIQVFSETTI DLDRVSYPVF KHKQQLDQTS ECLFPSGSPR
201: FKEHHEDFCG ILQLSDEVLA HNILSRLTPR DVASIGSACR RLRQLTKNES VRKMVCQNAW GKEITGTLEI MTKKLRWGRL ARELTTLEAV CWRKFTVGGI
301: VQPSRCNFSA CAVGNRLVLF GGEGVNMQPL DDTFVLNLDA ECPEWQRVRV TSSPPGRWGH TLSCLNGSWL VVFGGCGRQG LLNDVFVLDL DAKHPTWKEV
401: AGGTPPLPRS WHSSCTIEGS KLVVSGGCTD AGVLLSDTFL LDLTTDKPTW KEIPTSWAPP SRLGHSLSVF GRTKILMFGG LANSGHLKLR SGEAYTIDLE
501: DEEPRWRELE CSAFPGVVVP PPRLDHVAVS MPCGRVIIFG GSIAGLHSPS QLFLIDPAEE KPSWRILNVP GKPPKLAWGH STCVVGGTRV LVLGGHTGEE
601: WILNELHELC LASRQDSDL

Arabidopsis Description

ADO3FKF1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8F6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.