CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d024365_P001	Maize	cytosol, nucleus, peroxisome	79.46	82.66
Os08t0230300-00	Rice	cytosol, endoplasmic reticulum, nucleus	69.77	80.36
TraesCS7D01G290000.1	Wheat	cytosol	63.57	73.87
TraesCS7A01G291800.1	Wheat	cytosol	63.57	73.87
TraesCS7B01G197900.1	Wheat	cytosol	63.37	73.65
HORVU7Hr1G067710.13	Barley	cytosol	62.4	71.88
GSMUA_Achr1P23600_001	Banana	plastid	51.55	51.45
PGSC0003DMT400068170	Potato	endoplasmic reticulum, plasma membrane, plastid	45.35	50.21
KRH47295	Soybean	endoplasmic reticulum, plasma membrane, plastid	43.41	49.02
VIT_09s0054g00610.t01	Wine grape	plastid	44.57	48.63
KRH44610	Soybean	endoplasmic reticulum, nucleus, peroxisome	40.89	47.95
CDX82216	Canola	cytosol, endoplasmic reticulum, plastid	42.44	47.3
CDY32406	Canola	cytosol, endoplasmic reticulum, plastid	42.25	47.19
Bra001813.1-P	Field mustard	cytosol, endoplasmic reticulum, plastid	42.05	47.17
AT1G51550.1	Thale cress	plastid	41.28	44.56
Solyc06g063300.2.1	Tomato	endoplasmic reticulum, plastid	44.57	37.46
OQU83614	Sorghum	cytosol	20.54	17.85
EES04532	Sorghum	cytosol	20.74	17.48
EER90290	Sorghum	cytosol	21.12	17.27

Protein Annotations

EnsemblPlants:OQU80127	EnsemblPlantsGene:SORBI_3007G084300	EntrezGene:8086084	Gene3D:1.20.1280.50	Gene3D:2.120.10.80	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	PANTHER:PTHR23244
PANTHER:PTHR23244:SF324	PFAM:PF13418	PFAM:PF13854	ProteinID:OQU80127	ProteinID:OQU80127.1	SEG:seg
SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI000B8B9C6F	UniProt:A0A1Z5R8V2	MapMan:19.2.2.8.1.4.6	:

Description

hypothetical protein

Coordinates

chr7:-:10263053..10269792

Molecular Weight (calculated)

56504.5 Da

IEP (calculated)

6.971

GRAVY (calculated)

-0.145

Length

516 amino acids

Sequence
(BLAST)

001: MGCDGAAGGG GERMEEDEAG ASTSSSSPPP PIAQLGYDQV LSILRLLPPE AVLSFAATCR AFRAWASTDA LWEALCRRDW GARATAALAE RRHDRHGGGL
101: QAPWRRVYAE VARLGALSAR RVPVRGASPR PRASHSLNLV AGWLVLFGGG CEGDVNWPQI LDAMQTMWIL QETSSDLGVM VMSVLHQVLD FYGGHHLDDT
201: WVAYAGTGAG NRPPAILSWQ QLASGTPGGR FSHSCTLVGD TLVLFGGITD QGQRLNDTWI GQIFSEEHRR MRISWRLLEV GPLAPPPRGA HAACCVDEKF
301: IVIHGGVGLY GSRLGDTWLL DLSNGFQSAS WHQVGNTWPL PPPRSGHSLT WIGGTRMVLF GGRGSEFEVL NDVWLFDISD QYPKWKELKY DLSSALGELP
401: FPRVGHSAIL ALGGKVLVYG GEDSQMRRKD DFWILDTPAL LQYESGSKKM TKKMWKKLRI DGQCPNYRSF HGACVDTSGC CVYIFGGMVD GLVHPAEAWG
501: LRFDGHLYQV ELLLHL

Best Arabidopsis Sequence Match ( AT1G51550.1 )
(BLAST)

001: MAAESTRNSS PPSTSQSSSP IINLPDDHLL TILLLLPVDS ILSFSMTCKR YKSLACSDSL WEALCEREWG PTSVDALKLS SLRDGFSWML MFQRVYKMDS
101: VCCHKISDPD DDDEESSSFP IPRASHSLNF VNDHLVLFGG GCQGGRHLDD TWTSYVDKSN QSILKWKKVK SGTPSGRFGH TCIVIGEYLL LFGGINDRGE
201: RLNDTWIGQV FCHEGLSWKL LNVGSLQRPR PPPRGAHSAC CIAEKKMVVH GGIGLNGVRL GDTWILELSE DFSSGTWHMV ESPQLPPPRS GHTLTCIREN
301: QVVLFGGRGL GYDVLDDVWI LDIQEPCEEK WIQIFYDFQD VPEYASLPRV GHSATLVLGG RILIYGGEDS YRHRKDDFWV LDVKTIPSSG LKPQGLSLNG
401: SSVWKKLDRI SYGPKSRSFH RACADCSGRF LYVFGGMVDG LLQPAASSGL RFDGELFMVE LVLGFSDLDH QQRPGKSM

Arabidopsis Description

F-box/kelch-repeat protein At1g51550 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8K7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.